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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008230383.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | RAV | ||||||||
Protein Properties | Length: 314aa MW: 36281.1 Da PI: 8.1259 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.5 | 1.4e-12 | 20 | 68 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAaka++ a +++g XP_008230383.1 20 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNAEEEAAKAYDIASIRFRG 68 78****9888.8*********3.....5*********************999887 PP | |||||||
2 | B3 | 96.5 | 1.7e-30 | 152 | 254 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kv tpsdv++++r+v+pk++ae+h + +e +++ l +ed +g++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD+v F++++ + XP_008230383.1 152 FEKVATPSDVGRLNRMVIPKQHAEKHfpshlS--EElcKGVLLNFEDGEGKVWRLRYCYWSSSQSYVLTKGWTRFVKEKKLKAGDVVRFERSRGE 244 89*************************99552..44448899************************************************99889 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 e+++++ + XP_008230383.1 245 EKKMFIDCRP 254 9989888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.93E-24 | 20 | 75 | No hit | No description |
SuperFamily | SSF54171 | 2.03E-16 | 20 | 77 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.4E-8 | 20 | 68 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-19 | 21 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.757 | 21 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-24 | 21 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-5 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-5 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-39 | 146 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.41E-31 | 148 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.45E-29 | 150 | 246 | No hit | No description |
Pfam | PF02362 | 2.4E-28 | 152 | 255 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.156 | 152 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-24 | 152 | 255 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDVLNESTSE AANSNKLPSS RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN AEEEAAKAYD 60 IASIRFRGLE TITNFNQNQL KPYMDGDSET LFLQSHSKAE IVDMLRKHSY TNELEMYKLK 120 LFNAGDDDAA RKRIKCHVNL MEGYDHQREW LFEKVATPSD VGRLNRMVIP KQHAEKHFPS 180 HLSEELCKGV LLNFEDGEGK VWRLRYCYWS SSQSYVLTKG WTRFVKEKKL KAGDVVRFER 240 SRGEEKKMFI DCRPRNVEVS GLGEMASRVE VEEPLSRVQE DDGVVRLFGV NIVETCSCIV 300 DNNMRWRLGA RISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-47 | 149 | 256 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008230383.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008230383.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | P82280 | 1e-102 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | M5XF16 | 0.0 | M5XF16_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | XP_008230383.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-105 | related to ABI3/VP1 2 |