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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008230340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | CO-like | ||||||||
Protein Properties | Length: 386aa MW: 42708.3 Da PI: 5.0497 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.3 | 5.8e-07 | 17 | 57 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C+++ + + +C+ ++ +lC C ++H H+ XP_008230340.1 17 RVCDTCRSAACTVYCRADSAYLCSGCDATIHAAnrvasrHE 57 79******99*********************5556666676 PP | |||||||
2 | zf-B_box | 30.6 | 7.1e-10 | 59 | 104 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC C +H+ H++vp+ XP_008230340.1 59 VWVCEACEQAPAAFLCKADAASLCTACDADIHSAnplarrHQRVPI 104 689*****************************66899999**9997 PP | |||||||
3 | CCT | 69.8 | 7e-24 | 317 | 360 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_008230340.1 317 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 360 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.637 | 14 | 61 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-7 | 14 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.17E-8 | 17 | 61 | No hit | No description |
PROSITE profile | PS50119 | 11.249 | 57 | 104 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.9E-8 | 58 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.50E-9 | 60 | 104 | No hit | No description |
SMART | SM00336 | 3.2E-10 | 62 | 104 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.648 | 317 | 359 | IPR010402 | CCT domain |
Pfam | PF06203 | 7.6E-18 | 317 | 359 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MLKEESNGAA TTNNWARVCD TCRSAACTVY CRADSAYLCS GCDATIHAAN RVASRHERVW 60 VCEACEQAPA AFLCKADAAS LCTACDADIH SANPLARRHQ RVPILPISGC LYGPQATDPG 120 GIEVGSAAAE TEDGFLSQEG DETIDEEDED EAASWLLLNP MKNNNNNCNN NNNQSNGFFF 180 GVEVDEYLDL VEYNSSCGDQ NQFTDHHQHN QQQEQQQQHY GVPVPHKNYG GDSVVPVQMQ 240 KQSFHQLGLE YESSKAAYSY NGSLSNTVSV SSMDVGVVPD STMSDISISH PRTPKGTIDL 300 FSGPPIQMPS QLSPLDREAR VLRYREKKKT RKFEKTIRYA SRKAYAETRP RIKGRFAKRT 360 EMEVEVDQMF STTLMAENGY GIVPSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008230340.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008230340.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 2 | ||||
Swissprot | Q96502 | 1e-147 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A314URX2 | 0.0 | A0A314URX2_PRUYE; Zinc finger protein CONSTANS-LIKE 2 | ||||
STRING | XP_008230340.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3827 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-132 | CONSTANS-like 2 |
Publications ? help Back to Top | |||
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