PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230308.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 320aa    MW: 35371.8 Da    PI: 5.2298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230308.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.88.2e-183382255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f+ Lr+l+Pk+    ++K +Ka+ L +++eYI+ Lq
  XP_008230308.1 33 RSKHSETEQRRRSKINERFQMLRDLIPKN----DQKRDKASFLLEVIEYIQFLQ 82
                    899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-192891IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-232890IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-172985No hitNo description
PROSITE profilePS5088817.2183181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-153382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-123787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAKASKGHHD EFEDDDEESH GVKVEGQGRE KNRSKHSETE QRRRSKINER FQMLRDLIPK  60
NDQKRDKASF LLEVIEYIQF LQEKVNLYEG YQGWSPEPTK LMPWKNHNRP GENFVDQSQV  120
MNNGSGHENN AVVSPAMLPN THNSVESDLG SGVVYKALDH IPGLATRSVP NVQQQNIFDP  180
IGSVGLPTQP LQESISDAEN MTSNPPYQLW QGITSTTASD DKLKKQDENS GSGSISSAYS  240
QGVLNNLTQA LQSSGVDLSQ ASISVQINVG SRVDSGLTSM ASSSKAQLNQ SLNNQMTQTQ  300
VSSCDEDFEP AHKRLRTGES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220225DKLKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230308.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894140.0KP689414.1 Prunus pseudocerasus isolate CL6922.1 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230308.10.0PREDICTED: transcription factor BIM2 isoform X2
TrEMBLA0A251Q5060.0A0A251Q506_PRUPE; Uncharacterized protein
STRINGXP_008230307.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-52BES1-interacting Myc-like protein 2