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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008230296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | TALE | ||||||||
Protein Properties | Length: 655aa MW: 71993.1 Da PI: 7.7372 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.4e-09 | 371 | 408 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + XP_008230296.1 371 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 408 554459******************************88 PP | |||||||
2 | BELL | 119.1 | 2e-38 | 235 | 306 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +rqelq+kkakL+s+l+eV++rY+qy++q+q vi sFe++ag gsak+Yt+lAl++iS++FrcLkdai+ qi XP_008230296.1 235 QRQELQMKKAKLVSMLDEVEQRYRQYHQQMQFVITSFEQAAGFGSAKSYTHLALQTISKQFRCLKDAISAQI 306 69********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.4E-61 | 165 | 304 | IPR006563 | POX domain |
Pfam | PF07526 | 3.1E-48 | 170 | 303 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.066 | 349 | 412 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-10 | 352 | 416 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.60E-12 | 352 | 413 | No hit | No description |
SuperFamily | SSF46689 | 4.71E-17 | 353 | 419 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 355 | 418 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.4E-18 | 369 | 408 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MATFFHHGSS EIQAPTDHAL QTLYLMNPNY VPSFSDSAQQ NPTPPSMLLF NHTPPPTTHH 60 LVGIPLHSAA VGSNNSDDHS PPSLHHQTDP SRLHYNLWGP MGGQTPIGAS AVSPTSATTQ 120 QGLSLSLSTH QQPGYNSNYR PSSFPAERDV PDKGTSLSSV SAISHGFSGV LLGSKYLKAA 180 QELLDEVVHV GKGSNAAELD GGIKDKMKVS RETTAGIGAS SSGGAKQGAE LNTAQRQELQ 240 MKKAKLVSML DEVEQRYRQY HQQMQFVITS FEQAAGFGSA KSYTHLALQT ISKQFRCLKD 300 AISAQIKAGS KNLGEEECLG AKIEGSRLKY IDNHVRQQRA LQQLGMVQHN PWRPQRGLPE 360 RAVSVLRAWL FEHFLHPYPK DSDKVMLAKQ TGLTRSQVSN WFINARVRLW KPMVEEMYVE 420 ETKEQEKNGS GNNANYKESG STTPRESAST RIDDQMFRST HENFSNQHPS PNEKSNNSSL 480 SASPMAGSLQ SQSGFNLVGM SNMQGSPKKR KSSEIENSPS SILSVDADMK ANETNREITA 540 DHANGFGTYP IPEIGRFDMN PEHLAQRFHG NGVSLTLGLP HRENSSLSGT QQSFLSNHGQ 600 INIHDQLGRR FNTGGEADFC AINHPQPSHS GIDYEDMDMR SRKRFAAQLL PDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-16 | 358 | 416 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-16 | 358 | 416 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008230296.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008230296.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_008230304.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
TrEMBL | M5WRB5 | 0.0 | M5WRB5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008230296.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-141 | BEL1-like homeodomain 1 |