PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_008230287.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 408aa MW: 46046.2 Da PI: 7.1541

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008230287.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	324.5	2.1e-99	32	407	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA++ +sg+l+la+++L+++s las +gd+mqRlaa f+ ALa rl+++++++ kal+ ++ + e +a+ +f +++P+l f++ XP_008230287.1 32 LIQLLIKCANHAASGNLNLADECLCQISRLASLHGDSMQRLAARFASALAVRLVKNWPGIHKALNYDTKWN--KLELDQARVIFTKAFPYLGFAY 124 689***********************************************************9999874..4555557778******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 + +++l+a++ e+ +Hi+D++ + W++Llq++a+ p+gpp+l+iT v+ +k le++g +L k Ae+l++pf++n+l +l +l+ XP_008230287.1 125 AIIARTLLQAMSAERVIHIVDLGSADPKLWAPLLQSFAALPDGPPHLKITCVHG----NKAVLEKLGPKLVKEAEALDMPFQYNPL-NVSLRELT 214 **************************************************....99*********************5.889* PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll...............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 ++L+v++gEal ++l++h ll + +v+ ++ +e+L +v+s+sPkvv +veqea hn + ++erf+e l+yysa+fds XP_008230287.1 215 KDMLKVRSGEALGFVSILNIHVLLaqddqvdtqfrpkksNIDVKDCKQMSEFLGMVRSMSPKVVLLVEQEAHHNLNHLVERFIEGLHYYSAIFDS 309 ********************************966444555557899**************************************** PP GRAS 271 leaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 lea+++ s eer ++E+ +grei+n+va eg er+erhe+++ W r+ e+GFkpv+l + +++ k +gy++ +++ sl+++W XP_008230287.1 310 LEASFGGLSsssEERFVLEEI-FGREIENIVAWEGVEREERHERYAWWMVRFCEVGFKPVRLWLDSMEDSK--------KGYKIISQRTSLMICW 395 9966544443788888877.**************************************999998875........79********** PP GRAS 363 kdrpLvsvSaWr 374 ++rpL++vSaW+ XP_008230287.1 396 NERPLYAVSAWT 407 *********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.392	6	395	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.2E-97	32	407	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MYPSSSSSSS SSLSSSSPLL EALKPEERGL HLIQLLIKCA NHAASGNLNL ADECLCQISR 60 LASLHGDSMQ RLAARFASAL AVRLVKNWPG IHKALNYDTK WNKLELDQAR VIFTKAFPYL 120 GFAYAIIART LLQAMSAERV IHIVDLGSAD PKLWAPLLQS FAALPDGPPH LKITCVHGNK 180 AVLEKLGPKL VKEAEALDMP FQYNPLNVSL RELTKDMLKV RSGEALGFVS ILNIHVLLAQ 240 DDQVDTQFRP KKSNIDVKDC KQMSEFLGMV RSMSPKVVLL VEQEAHHNLN HLVERFIEGL 300 HYYSAIFDSL EASFGGLSSS SEERFVLEEI FGREIENIVA WEGVEREERH ERYAWWMVRF 360 CEVGFKPVRL WLDSMEDSKK GYKIISQRTS LMICWNERPL YAVSAWTC

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MYPSSSSSSS SSLSSSSPLL EALKPEERGL HLIQLLIKCA NHAASGNLNL ADECLCQISR  60
LASLHGDSMQ RLAARFASAL AVRLVKNWPG IHKALNYDTK WNKLELDQAR VIFTKAFPYL  120
GFAYAIIART LLQAMSAERV IHIVDLGSAD PKLWAPLLQS FAALPDGPPH LKITCVHGNK  180
AVLEKLGPKL VKEAEALDMP FQYNPLNVSL RELTKDMLKV RSGEALGFVS ILNIHVLLAQ  240
DDQVDTQFRP KKSNIDVKDC KQMSEFLGMV RSMSPKVVLL VEQEAHHNLN HLVERFIEGL  300
HYYSAIFDSL EASFGGLSSS SEERFVLEEI FGREIENIVA WEGVEREERH ERYAWWMVRF  360
CEVGFKPVRL WLDSMEDSKK GYKIISQRTS LMICWNERPL YAVSAWTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-48	24	407	11	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008230287.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008230287.1	0.0	PREDICTED: scarecrow-like protein 3
TrEMBL	A0A314UTV1	0.0	A0A314UTV1_PRUYE; Scarecrow-like protein 3
STRING	XP_008230287.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15813	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-106	scarecrow-like 3