PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229954.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 957aa    MW: 104775 Da    PI: 7.0607
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229954.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.32.3e-16525562340
             TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     +k+CnCkk+kClk+YC+Cfaag++C+e+C C++C+N +
  XP_008229954.1 525 TKRCNCKKTKCLKLYCDCFAAGVYCAESCACQGCFNIT 562
                     699*********************************76 PP
2TCR50.24.9e-16602640139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks ClkkYCeC++a++ Cs+ C+C++CkN 
  XP_008229954.1 602 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCDGCKNV 640
                     589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-14523564IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.106524642IPR005172CRC domain
PfamPF036383.0E-12526560IPR005172CRC domain
SMARTSM011146.8E-17602643IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.5E-11604639IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MDSPEIRKIK ANTTSSSDSP PVQDSPVFSY INNLSPIQPV KASHLAQGFP GLNSPPLVFT  60
SPRINSHRDT SFLKRPQYQP LSSAEKRKTQ DEAKKFLDGP VDPKITQLHM RLITDSRDCE  120
TKIRVESQQC SSSEGVDEYL ADPSEVDSVD STQSASPCLK QSNNVPETFT GSKETTLYDN  180
KHNTGTDLGT EAKAPSEQAK EDLEGKQTFD AKPVKIIEQS DGELPYDECP NIESGLSVNN  240
AYKREYRQHL HDQDRGGKHE DDCDHTPQSP TGRLQIVQVY ENSAENVGAI SKGMIGNMIL  300
HAPKARSEQG GMHRRCLQFE EAPPCATGKR DCSLSSMQEV NYSEPPSGTG ESKLVKLSYA  360
DLKATSKRQM GTPLPPQFGG NSPSTVPKPS GIGLHLNSIV NAAPLVRGTT RSIKLADHYI  420
GVQVMKSASV MSSHLQDNVR CRSISLNMVE KDSAGPEDRD ESETSIAASS AVPQSPHTVV  480
FECHGPTHEK RGFDAENVDD YEECKQSSPK KKRKKTSSTK DSDGTKRCNC KKTKCLKLYC  540
DCFAAGVYCA ESCACQGCFN ITDYEDTVLE TRQHIESRNP LAFAPKIVQH EEEIQFTPSS  600
ARHKRGCNCK KSMCLKKYCE CYQANVGCSS GCRCDGCKNV YGRKGEYIPI EHGVGKDNVS  660
DKAGKERIES TFDEKLEMVA TKKDILSTEL YDSHNLTPLA PSFQCSDHAN NVPKSLCLPT  720
SYLPSPESDL SIISSYEKST RSPLRHSESS DILLETSKEL SDLGSYNWRV DYDNIGIADT  780
FSPRCDAAPT TCHITPMSDL CSMAMVSSAS SKTSDWTNAS QVQLCPGSHG LSSDSSLHRR  840
SSPVTPMTRL GGTKSCQGLD FENGLYDILQ DDTPEILKDS STPIRSLKVS SPNKKRVSPP  900
HSHNHELGAS SSGALRSGRK FILKAVPSFP PLTPCIGSKG SSIIQNMSNL QDKGKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-2052864014121Protein lin-54 homolog
5fd3_B4e-2052864014121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510514KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229954.10.0PREDICTED: CRC domain-containing protein TSO1-like
TrEMBLA0A251RE800.0A0A251RE80_PRUPE; Uncharacterized protein
STRINGXP_008229954.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-54Tesmin/TSO1-like CXC domain-containing protein