PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008229651.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 856aa MW: 98028.5 Da PI: 6.8648

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008229651.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	100	186	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYA++vGF +++++s++sk++g++++ + Cs+ g+++e+ ++ + + t+t+Cka+l++k+++dgkw+v+++ +eHnHe++p XP_008229651.1 100 YYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESGTT---VNPRLCITKTDCKASLHIKRKDDGKWVVHSFIKEHNHEMCP 186 9***************************************9888...5666789******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-21	100	186	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-25	269	360	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.076	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.5E-7	548	581	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-7	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MEIDLELPSC EQDKLETGSD KDVNVVDVTD EKNVEEHVNS PTSEHVKEAD GLDANQSACS 60 LQAQDDAKNM GLNAVDEGKR VIQEPQNGLE FESKEEAYSY YREYARSVGF GITIKASRRS 120 KKSGKFIDIK IACSRFGSKR ESGTTVNPRL CITKTDCKAS LHIKRKDDGK WVVHSFIKEH 180 NHEMCPDDFI YAISGRNKKP ATVACQKKGL QSALGEEDVR VMFEHFMCMQ DEDPNFFYAI 240 DFDLEKRLRS VFWIDAKCRH DYSSFCDAVF FDTYYVRNNY RIPFVPIVGV NHHFQYILLG 300 CALMGEETIP AFVWLMRTWL KVVGGQAPRL IITDQDKYLK EAVADVFTDA YHCFCLWHVL 360 SRIPENVGFF IKENEIFMEK FNKCIYRSWT VEQFEKKWWK LVDRFELREN EWVHSLFEDR 420 KKWVPTYMQD SFMAGMSTRE RSGSITSFFD RYISQEATVN DFIEQYKGFQ KDMYDMEVNA 480 ALETQDKQPG LRSLSTFEKQ MATIYTGSVF KKFKVEVLGL ASCQLQKDGE NEATAIFRVD 540 DLEERQNFTV SWNDAELKVC CSCHSFEYKG FLCRHAILVL QVSGVSSIPS HYILKRWTKD 600 AKVRCTVSDG PKRLNYRVQR FNDLCKLAVK LGEEGSLSPE TYHIAFQALE AALKHCVDAN 660 NSVRTVSEAN MSANHGFNDV EEVNPSSNMA KSSKKKKTYK KRKAQTEQDS LTIRLQDSCQ 720 QMEQMKSRAH NPDNCYVPQQ ELEGEHGSRS RGLDSYYGAQ QSMPGMGQMN SIAPISDGYY 780 GNQQATQGQL HSLPTRVGHY GTQQSMRGMG QLSFRSPTVQ SCFDIQGNLQ DMEHSAGSSH 840 FHGNASKRPH GKHQTQ

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MEIDLELPSC EQDKLETGSD KDVNVVDVTD EKNVEEHVNS PTSEHVKEAD GLDANQSACS  60
LQAQDDAKNM GLNAVDEGKR VIQEPQNGLE FESKEEAYSY YREYARSVGF GITIKASRRS  120
KKSGKFIDIK IACSRFGSKR ESGTTVNPRL CITKTDCKAS LHIKRKDDGK WVVHSFIKEH  180
NHEMCPDDFI YAISGRNKKP ATVACQKKGL QSALGEEDVR VMFEHFMCMQ DEDPNFFYAI  240
DFDLEKRLRS VFWIDAKCRH DYSSFCDAVF FDTYYVRNNY RIPFVPIVGV NHHFQYILLG  300
CALMGEETIP AFVWLMRTWL KVVGGQAPRL IITDQDKYLK EAVADVFTDA YHCFCLWHVL  360
SRIPENVGFF IKENEIFMEK FNKCIYRSWT VEQFEKKWWK LVDRFELREN EWVHSLFEDR  420
KKWVPTYMQD SFMAGMSTRE RSGSITSFFD RYISQEATVN DFIEQYKGFQ KDMYDMEVNA  480
ALETQDKQPG LRSLSTFEKQ MATIYTGSVF KKFKVEVLGL ASCQLQKDGE NEATAIFRVD  540
DLEERQNFTV SWNDAELKVC CSCHSFEYKG FLCRHAILVL QVSGVSSIPS HYILKRWTKD  600
AKVRCTVSDG PKRLNYRVQR FNDLCKLAVK LGEEGSLSPE TYHIAFQALE AALKHCVDAN  660
NSVRTVSEAN MSANHGFNDV EEVNPSSNMA KSSKKKKTYK KRKAQTEQDS LTIRLQDSCQ  720
QMEQMKSRAH NPDNCYVPQQ ELEGEHGSRS RGLDSYYGAQ QSMPGMGQMN SIAPISDGYY  780
GNQQATQGQL HSLPTRVGHY GTQQSMRGMG QLSFRSPTVQ SCFDIQGNLQ DMEHSAGSSH  840
FHGNASKRPH GKHQTQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008229651.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008229651.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A251Q244	0.0	A0A251Q244_PRUPE; Uncharacterized protein
STRING	XP_008229651.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]