PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229616.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 915aa    MW: 100880 Da    PI: 6.4469
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229616.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.4e-24132233199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_008229616.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 222
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_008229616.1 223 KNQLLLGIRRA 233
                     9999****997 PP
2Auxin_resp118.65.1e-39258341183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrW+nS+Wrs+k
  XP_008229616.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWTNSHWRSVK 341
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.11E-49117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-42123247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-21131232No hitNo description
PROSITE profilePS5086312.548132234IPR003340B3 DNA binding domain
SMARTSM010191.8E-24132234IPR003340B3 DNA binding domain
PfamPF023625.3E-22132233IPR003340B3 DNA binding domain
PfamPF065074.3E-34258341IPR010525Auxin response factor
SuperFamilySSF542771.05E-7773853No hitNo description
PfamPF023096.4E-7776864IPR033389AUX/IAA domain
PROSITE profilePS5174525.956779864IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MRLSSSSSSS GFNHQPQEGE KKCLNSELWH ACAGPLVSLP LLGSRVVYFP QGHSEQVAAS  60
TNKEVDAHIP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLSPQE QKDVYLLPAE  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDSV RWTNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWPSGIPSFH GLKDGDMGIN APLMWLQGGV GDQGIQSLNF  420
QGFGVTPWMQ PRLDASMAGL QPEVYQAMAA AALQEMRTVD SSKCASQSLL PFQQSSNVSN  480
GSAAVLQRQV LPQSQSQNTY LQSFQENQAP AQAQVLQQQL QRYHPYSDQR QQQQLQQHQQ  540
QQQLELQLQQ SHHLHQLSVQ QQIPNVMSAL SNFASATQSQ SASLQAIPSQ PQQQSFPDPV  600
GNPISSSDVP PIHSILGSLS QDGASHLLNL SGSNSVISSS LLPKQIAGEQ QLSSGAAQCV  660
LPQVEQLGTP QSNISELTAL PPFPGREYSA FQGGTDPQSN LLFGVNIDSS SLMLHNGIPT  720
LRNIGNGNDS LSMPFGASSY TSATGNDFPL NSDMTTSSCV DESGFLQSSE NVDQVNPTRN  780
FVKVHKSGSF GRSLDISKFS SYDELRSELA RMFGLEGQLE DPQRSGWQLV FVDRENDVLL  840
LGDDPWQEFV NNVWYIKILS PHEVQQMGKE GHNRAASVPS NKLSNGGNNT CDDYVSRQDL  900
RNSTNGIASL GSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631736243388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229616.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229616.10.0PREDICTED: auxin response factor 6-like
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM5WYY70.0M5WYY7_PRUPE; Auxin response factor
STRINGXP_008229615.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]