PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229596.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 542aa    MW: 59490.1 Da    PI: 7.3892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229596.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.7e-16343389455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  XP_008229596.2 343 VHNLSERRRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 389
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-20336404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.152339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.33E-18342393No hitNo description
PfamPF000108.8E-14343389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-20343397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MNSCIPDWNF EADLPLTNQK KPMGPNHELV ELLWRNGQVV LHSQTHRKPS PNPPNEARQV  60
QKQDQQTVRV GGLYGNSSNL TQDEDTGSLI HYPLEDSFDK EFCSHFFSEL PSCDPIEIDK  120
PTKQFEEEKF AKFGASDTPH LVSAAPQPNV KSPAGMGYPA NPMPPPRYQY NNSTEQNQNL  180
GGLGKVVNFS TFATPGKGDR GSSRXXXXXX XNLTQGEVKE CSVMTVGSSY VGSNQVLNDL  240
DVSRASSNCD GTTGLSVGPF YDNVQKMMPQ SETGKTDTLD PTPTSSSGGS GSSFGRGGKR  300
SNVVNSNKRK GRDAEDSECQ SEAAGNKSAQ RSGSSRRSRA AEVHNLSERR RRDRINEKMR  360
ALQELIPHSN KTDKASMLDE AIEYLKSLQM QLQVMWMGSG MAPMMFPGMQ HYMPRMGMGM  420
GVGMGMGPPA LPSMHNPMHL PRVPLVDQCM NVAPATNQAV MCQAPLLNPV DYHNQMQNPA  480
FQEQYARLMG FHHMQTMSQP MNMFRFGSQP MQQNQMTAPT GINSGHLGGG GTANDTLSGK  540
MC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1347352ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229596.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894150.0KP689415.1 Prunus pseudocerasus isolate Unigene5738 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229596.20.0PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF4
TrEMBLA0A251Q5830.0A0A251Q583_PRUPE; Uncharacterized protein
STRINGEMJ174550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.22e-60phytochrome interacting factor 4