PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229223.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 290aa    MW: 32661.2 Da    PI: 7.1417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229223.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09203246755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++ ++RR+ri +++  L+el+P+ +      K++ +++LekA+ Y+k Lq
  XP_008229223.1 203 IAAKNRRERISERLRILQELVPNgC------KVDLVTMLEKAISYVKFLQ 246
                     5679*******************77......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-13195255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.418196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-11197253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-10202250No hitNo description
SMARTSM003531.1E-10202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6204246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MALAKDMRMP HDSCTHESPQ VSSDLSNGFV FRATSNYHQP DHQVAHSVIN FKSSGYNSFF  60
QNSESLLSFE KNSKQNILKT RNDKDEHFNC DDDLHHGNYQ WNHTASVSDP RLSGDFNCFQ  120
TRSNYSSMPN TSKDDHGDEA YGWLYSEATV VADGFQEPES QEGFHKRPHT GEAMQPLKKQ  180
CTNSGTKKPK PKSSSPTKDP QSIAAKNRRE RISERLRILQ ELVPNGCKVD LVTMLEKAIS  240
YVKFLQLQVK VLATDEFWPV QGGKAPDISQ VKEAIDAILT SQRDTSSSSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229223.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229223.10.0PREDICTED: putative transcription factor bHLH086
TrEMBLA0A251Q0S90.0A0A251Q0S9_PRUPE; Uncharacterized protein
STRINGXP_008229223.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.12e-46RHD SIX-LIKE 1