PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229134.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 224aa    MW: 25090.6 Da    PI: 8.8391
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229134.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.11e-261499192
          DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
                    aCaaCk++r+kC ++Cvlap       ++f +vhk+FG snv+k++k+++e +++++++slv+eA +r++dPv G +g ++ +  +l++ k+
  XP_008229134.1 14 ACAACKHQRKKCHDGCVLAPT------REFLAVHKVFGLSNVMKMVKNANEANQRKVVDSLVWEALCRQKDPVLGPYGEYRMVFDELKRYKN 99
                    7*******************9......99**************************************************9999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.65213109IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-251499IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MQRKNSGTPG TQPACAACKH QRKKCHDGCV LAPTREFLAV HKVFGLSNVM KMVKNANEAN  60
QRKVVDSLVW EALCRQKDPV LGPYGEYRMV FDELKRYKNH EIQMVHPSQV QKGMCFSKSL  120
SDFVGWNGGG ANGITNHNIN LGGYLHENEN VIIDSASYGY PSNCEFQSPE KIIKQAKLVD  180
SVVLPLNQHQ QRSINNINQQ YYLSGQLNQI ISKPIEGTIW EGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1581065108LOB family transfactor Ramosa2.1
5ly0_B2e-1581065108LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229134.11e-169PREDICTED: LOB domain-containing protein 2
TrEMBLA0A251PZB91e-157A0A251PZB9_PRUPE; Uncharacterized protein
STRINGXP_008229134.11e-168(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-35LOB domain-containing protein 2