PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008228879.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HSF | ||||||||
Protein Properties | Length: 437aa MW: 49739.6 Da PI: 4.983 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112.7 | 2.6e-35 | 14 | 104 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d++ ++++swse+g sfvv+d++efak++Lp yFkh+nf+SFvRQLn+YgF+k++ e+ weF++++F +g ++ll+k XP_008228879.1 14 FLTKTYDLVDDPSSNRVVSWSETGCSFVVWDPTEFAKEMLPMYFKHNNFSSFVRQLNTYGFRKIDPEQ---------WEFANEEFLRGGRHLLKK 99 9***************************************************************9998.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_008228879.1 100 IHRRK 104 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 7.2E-59 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.12E-34 | 10 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.1E-37 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 8.2E-20 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-31 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-20 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.2E-20 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MEGTQGGSNA PAPFLTKTYD LVDDPSSNRV VSWSETGCSF VVWDPTEFAK EMLPMYFKHN 60 NFSSFVRQLN TYGFRKIDPE QWEFANEEFL RGGRHLLKKI HRRKPIHSHS MQNHEYSSVP 120 LSETEREEYE KKINRLNHDK SLLELELQRH QRENQEFDYQ IQILQEQLQK MEHQQKQYTS 180 VLAQLLQKPG LASILMQKSE IHNKKRRLLT SSHVTDDFKM EILNFNTQNE NLGTISTPII 240 KLDQLEKMES SLNFWEDFLH GIGEAMPEEV NDIGLLSQAS PIIVTEIQDP GMNSRPCSPR 300 SRLSSPNSMN VSSPEVVGSA NFLDILAITS TCHNVDFRPK SSGIDMNSKP DTASAAEALK 360 EMVQEMKNAE PAAANDMFWE QCLTETPGLD DAQEVQSERG DSDGGVSNAN PAIQKKLWWN 420 TDVDNFTNQI GRLTSAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-26 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-26 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-26 | 3 | 103 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008228879.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008228879.1 | 0.0 | PREDICTED: heat stress transcription factor A-4b-like | ||||
TrEMBL | A0A251PYE8 | 0.0 | A0A251PYE8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228879.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14100 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45710.1 | 5e-80 | HSF family protein |