PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008228578.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 504aa MW: 55475 Da PI: 7.0774

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008228578.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	200	241	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L XP_008228578.1 200 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLTQLEQDL 241 6889*************************9877777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.1E-7	196	243	No hit	No description
SMART	SM00338	2.8E-7	197	260	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	199	243	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.3E-8	200	242	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.06E-6	201	243	No hit	No description
PROSITE pattern	PS00036	0	204	219	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.4E-32	282	357	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MASHRVGETA TGLSESGPSN HHVPYAVLHG MNAPSTSFLN QEGSAFDFGE LEEAIARQVR 60 NDEAQAPLFT GRPAATLEMF PSWPMRFHQT PRGSSKSGGE STDSGSQVNT LTSKGEGGQL 120 EPESPISKKA SSSDHQQAFD QKHLQFQQQQ QLQAQDMAIS DSSRGGAGAV GASQSQSAAK 180 PSQEKRKGAG STSENKQLDA KTLRRLAQNR EAARKSRLRK KAYVQQLETS RIKLTQLEQD 240 LQRARAQGLF LGGCGGGLGN ISSGAAIFDM EYARWLEDDH RHMSELRTGL QAHLSDSDLR 300 VIVDGYISHY DEIFQLKGVA AKSDVFHLIT GMWTTPAERC FLWMGGFRPS ELIKMLTAQL 360 DPLTEQQFMG IYSLQQSSQQ AEEALTQGLE QLHQSLVDTI AGGPVIDGMQ QMAVALGKLT 420 NLEGFVRQAD NLRQQTLHQL RRILTVRQAA RCFLVIGEYY GRLRALSSLW ASRPRESMIS 480 DDNSCQTTTD LQMVQTSQNH FASF

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MASHRVGETA TGLSESGPSN HHVPYAVLHG MNAPSTSFLN QEGSAFDFGE LEEAIARQVR  60
NDEAQAPLFT GRPAATLEMF PSWPMRFHQT PRGSSKSGGE STDSGSQVNT LTSKGEGGQL  120
EPESPISKKA SSSDHQQAFD QKHLQFQQQQ QLQAQDMAIS DSSRGGAGAV GASQSQSAAK  180
PSQEKRKGAG STSENKQLDA KTLRRLAQNR EAARKSRLRK KAYVQQLETS RIKLTQLEQD  240
LQRARAQGLF LGGCGGGLGN ISSGAAIFDM EYARWLEDDH RHMSELRTGL QAHLSDSDLR  300
VIVDGYISHY DEIFQLKGVA AKSDVFHLIT GMWTTPAERC FLWMGGFRPS ELIKMLTAQL  360
DPLTEQQFMG IYSLQQSSQQ AEEALTQGLE QLHQSLVDTI AGGPVIDGMQ QMAVALGKLT  420
NLEGFVRQAD NLRQQTLHQL RRILTVRQAA RCFLVIGEYY GRLRALSSLW ASRPRESMIS  480
DDNSCQTTTD LQMVQTSQNH FASF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008228578.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228578.1	0.0	PREDICTED: transcription factor TGA2 isoform X3
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	M5WAG4	0.0	M5WAG4_PRUPE; Uncharacterized protein
STRING	XP_008228563.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]