PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008228481.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 336aa MW: 36997.3 Da PI: 7.2217

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008228481.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00043	199	237	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_008228481.1 199 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 237 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.331	187	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-5	197	241	No hit	No description
SuperFamily	SSF47459	4.58E-10	197	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-7	197	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MMAGNPNWWS SMHPPSLFPS QYVQLGSSNS LPLNSLPEHN LEPPQSWSQL LLGGLSSQED 60 GFGTLSHFQP KGRLENWEED QILIPQYPRA PVVDFIKQES NSQNSINLCN NPHGDEEFQL 120 APSSRPVWSP VQIMPVSSPR SCVTSLSNNN ILDFSYNKAD NKRNQHADHS SECNSTATGG 180 MCKKARVQPS PSQPPLKVRK EKLGDRITAL HQLVSPFGKT DTASVLLEAI GYIRFLQGQI 240 EALSSPYLGN ASKNMRNQQS VQGERNCTCV FPEDPGQLLN DNCLKRKGAP NQHPSSQDKA 300 KDLRSKGLCL VPVSFTQHVG SDNGADYWAP AYGSGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008228481.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228481.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X2
Swissprot	Q8S3D1	3e-76	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A251PW95	0.0	A0A251PW95_PRUPE; Uncharacterized protein
STRING	XP_008228480.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-78	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]