PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008228290.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 300aa MW: 34197.2 Da PI: 6.3962

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008228290.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.1	6.1e-38	29	128	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lap fp++++++f n+hklFG+sn++k++k+l+ +++e+am+++++++++ra+dPv G++++i++lq+ +e kael+ XP_008228290.1 29 ACAACKYQRRKCAPDCILAPFFPHDRQRQFLNAHKLFGVSNITKIIKHLNLSDKEEAMRTIIFQSDIRANDPVGGCYRIIRELQRLIEYNKAELD 123 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_008228290.1 124 IVLHQ 128 88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.132	28	129	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-35	29	124	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSSISNHTHH QIPTPTTPTT TKGNGNAQAC AACKYQRRKC APDCILAPFF PHDRQRQFLN 60 AHKLFGVSNI TKIIKHLNLS DKEEAMRTII FQSDIRANDP VGGCYRIIRE LQRLIEYNKA 120 ELDIVLHQLA ICRAQAQQQQ QQQNQIQIPE VGDQNSCDQL INMDPLSFYN NQVAHYHYVQ 180 PHPHALPAVQ QEQQQQEVPY VLVQNNNINS PNSNSNNNNN NPHQHLHEDM NMWAMQDSMS 240 SLDIKHGGGM NANDCEDLKP FVEIPCDDDQ INGEVRFQPE DIGDHQQRFV VPNTKLLISS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-25	14	123	2	105	LOB family transfactor Ramosa2.1
5ly0_B	1e-25	14	123	2	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008228290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228290.1	0.0	PREDICTED: LOB domain-containing protein 22
TrEMBL	A0A251PVE4	1e-179	A0A251PVE4_PRUPE; Uncharacterized protein
STRING	XP_008228290.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-50	LOB domain-containing protein 22