PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008228288.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 590aa MW: 63759.5 Da PI: 8.9797 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.7e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_008228288.1 94 FICEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.5 | 0.00045 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_008228288.1 170 WKCDKCSKRYAVQSDWKAHSKTC 192 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.05E-6 | 93 | 116 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 93 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.845 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 7.3E-5 | 94 | 116 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 240 | 135 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.0E-4 | 158 | 191 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.05E-6 | 165 | 190 | No hit | No description |
SMART | SM00355 | 140 | 170 | 190 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 590 aa Download sequence Send to blast |
MMKGLMFQQQ QQQQHSQLVD ENMSNLTSAS GEAASVSSGN RNEIGTSFSQ QFFAPPPSQT 60 QPALKKKRNL PGNPDPEAEV IALSPKTLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW 120 KLKQRTSKEV RKKVYVCPEA SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA 180 VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIT TGNNNPLLIS 240 PQQQQLQQPG STSASHHHHM NLNQVQLAHQ FQDLHGFSLK KEQQSFTSLR PDLPPWLACP 300 GPPNNTSIDL SSSSSIFSTR LDQNFTQTHQ NLSLHDHDST APNPNPNPNP SLGPTLPPFQ 360 PAPSPHMSAT ALLQKAAQMG ATMSSKNSTA SAAAATSAGS SPQPMMRSHQ NNQSHVPDFG 420 GHVSSFGNNT AAAATTGAGV ASASSNGTGP PASSSGIHQH HHHQSQNQNQ NQNQHQASLL 480 RDMMNSLSSG TGFEGASFEL DAFGSMPTVL NNSKKDTNNS NNPSSAHFNR SSASDEGGGH 540 GEGLTRDFLG LRALSHSDIL NIAGLGSCVT SAATAAASSS LDQTHKPWQG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-35 | 166 | 235 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 2e-35 | 166 | 235 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 120 | 132 | KLKQRTSKEVRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008228288.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM465183 | 1e-150 | AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008228284.1 | 0.0 | PREDICTED: protein indeterminate-domain 7 | ||||
Refseq | XP_008228285.1 | 0.0 | PREDICTED: protein indeterminate-domain 7 | ||||
Refseq | XP_008228286.1 | 0.0 | PREDICTED: protein indeterminate-domain 7 | ||||
Refseq | XP_008228287.1 | 0.0 | PREDICTED: protein indeterminate-domain 7 | ||||
Refseq | XP_008228288.1 | 0.0 | PREDICTED: protein indeterminate-domain 7 | ||||
Swissprot | Q8H1F5 | 1e-125 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A251PVD5 | 0.0 | A0A251PVD5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228284.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-114 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|