PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008228284.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 590aa MW: 63759.5 Da PI: 8.9797

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008228284.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_008228284.1 94 FICEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP
2	zf-C2H2	12.5	0.00045	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_008228284.1 170 WKCDKCSKRYAVQSDWKAHSKTC 192 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.05E-6	93	116	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.6E-5	93	116	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	94	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	94	116	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	7.3E-5	94	116	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	135	165	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.0E-4	158	191	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.05E-6	165	190	No hit	No description
SMART	SM00355	140	170	190	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MMKGLMFQQQ QQQQHSQLVD ENMSNLTSAS GEAASVSSGN RNEIGTSFSQ QFFAPPPSQT 60 QPALKKKRNL PGNPDPEAEV IALSPKTLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW 120 KLKQRTSKEV RKKVYVCPEA SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA 180 VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIT TGNNNPLLIS 240 PQQQQLQQPG STSASHHHHM NLNQVQLAHQ FQDLHGFSLK KEQQSFTSLR PDLPPWLACP 300 GPPNNTSIDL SSSSSIFSTR LDQNFTQTHQ NLSLHDHDST APNPNPNPNP SLGPTLPPFQ 360 PAPSPHMSAT ALLQKAAQMG ATMSSKNSTA SAAAATSAGS SPQPMMRSHQ NNQSHVPDFG 420 GHVSSFGNNT AAAATTGAGV ASASSNGTGP PASSSGIHQH HHHQSQNQNQ NQNQHQASLL 480 RDMMNSLSSG TGFEGASFEL DAFGSMPTVL NNSKKDTNNS NNPSSAHFNR SSASDEGGGH 540 GEGLTRDFLG LRALSHSDIL NIAGLGSCVT SAATAAASSS LDQTHKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MMKGLMFQQQ QQQQHSQLVD ENMSNLTSAS GEAASVSSGN RNEIGTSFSQ QFFAPPPSQT  60
QPALKKKRNL PGNPDPEAEV IALSPKTLMA TNRFICEICN KGFQRDQNLQ LHRRGHNLPW  120
KLKQRTSKEV RKKVYVCPEA SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA  180
VQSDWKAHSK TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARAIT TGNNNPLLIS  240
PQQQQLQQPG STSASHHHHM NLNQVQLAHQ FQDLHGFSLK KEQQSFTSLR PDLPPWLACP  300
GPPNNTSIDL SSSSSIFSTR LDQNFTQTHQ NLSLHDHDST APNPNPNPNP SLGPTLPPFQ  360
PAPSPHMSAT ALLQKAAQMG ATMSSKNSTA SAAAATSAGS SPQPMMRSHQ NNQSHVPDFG  420
GHVSSFGNNT AAAATTGAGV ASASSNGTGP PASSSGIHQH HHHQSQNQNQ NQNQHQASLL  480
RDMMNSLSSG TGFEGASFEL DAFGSMPTVL NNSKKDTNNS NNPSSAHFNR SSASDEGGGH  540
GEGLTRDFLG LRALSHSDIL NIAGLGSCVT SAATAAASSS LDQTHKPWQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	166	235	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-35	166	235	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	132	KLKQRTSKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008228284.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465183	1e-150	AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228284.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_008228285.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_008228286.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_008228287.1	0.0	PREDICTED: protein indeterminate-domain 7
Refseq	XP_008228288.1	0.0	PREDICTED: protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-125	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A251PVD5	0.0	A0A251PVD5_PRUPE; Uncharacterized protein
STRING	XP_008228284.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-114	C2H2 family protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]