PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227906.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 491aa    MW: 53659.5 Da    PI: 6.5942
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227906.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.6e-1766110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
   XP_008227906.1  66 RERWTEEEHKKFLEALKLYGRA-WRKIEEHVG-TKTAVQIRSHAQKF 110
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.79E-1760114IPR009057Homeodomain-like
PROSITE profilePS5129421.73361115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-963112IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-1764113IPR006447Myb domain, plants
SMARTSM007171.2E-1365113IPR001005SANT/Myb domain
PfamPF002493.1E-1466109IPR001005SANT/Myb domain
CDDcd001677.48E-1168111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MVGGLMLSPD MDAAQDQYDG SRSESVLSAN NGVSFSVSGL QLKDQFSNGN DSAPKARKPY  60
TITKQRERWT EEEHKKFLEA LKLYGRAWRK IEEHVGTKTA VQIRSHAQKF FSKVARDSNG  120
SNXIDIPPPR PKRKPMRPYP RKLVHPVNKE TFIVERPTRS ASPNLSVSEP ENQSPTSVLS  180
VIGSDTLGSA DSNTPSRSLS PVSSAADVHG VDLNHSEPPN PSLEESGSTS PAVAENGSLP  240
NMQLSMKLEL FPTDNVDASG VSAEEVSARS LKLFGRTVLV TDSHRPSSPT MGTSKSLPSD  300
VKEEKPVQTS TLCNFTATES ASGSVEHVWD NFPYGVHPGM YFMQFQNQNS NLVESGSAYP  360
VPWWSLCPKL PFPFIPFHKP QAVKEHFDGN LGDPKEVEKE GSWTGSDAGS VNDEESGDKC  420
LGIETEGKEQ EPNSVLQFKA SANSAFSELR ASPSPGKCRK GFVPYKRCLA ERDTSTIASE  480
DRDGKRVRLS L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227906.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227906.10.0PREDICTED: LOW QUALITY PROTEIN: protein REVEILLE 1
TrEMBLA0A251PTI10.0A0A251PTI1_PRUPE; Uncharacterized protein
STRINGXP_008227906.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.15e-67MYB_related family protein