PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227817.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 298aa    MW: 34131.4 Da    PI: 5.0407
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227817.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.6e-184087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd  l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
   XP_008227817.1 40 KGPWTVEEDSVLFNYINTHGEGRWNSLARHAGLKRTGKSCRLRWLNYL 87
                     79********************************************97 PP
2Myb_DNA-binding482.8e-1593136146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_008227817.1  93 RGNITLQEQLLILQLHSRWGNR-WSKIAEYLP-GRTDNEIKNYWRT 136
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8363591IPR017930Myb domain
SuperFamilySSF466898.98E-3137134IPR009057Homeodomain-like
SMARTSM007171.2E-153989IPR001005SANT/Myb domain
PfamPF002495.4E-164087IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-224194IPR009057Homeodomain-like
CDDcd001679.49E-124287No hitNo description
SMARTSM007177.6E-1492140IPR001005SANT/Myb domain
PROSITE profilePS5129418.65692142IPR017930Myb domain
PfamPF002493.0E-1493136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2195141IPR009057Homeodomain-like
CDDcd001676.56E-7113136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDMADVHVHD HVRAGYGSSA APAEIHDQIP SEEEDVDLRK GPWTVEEDSV LFNYINTHGE  60
GRWNSLARHA GLKRTGKSCR LRWLNYLRPS VRRGNITLQE QLLILQLHSR WGNRWSKIAE  120
YLPGRTDNEI KNYWRTRVQK QAKQLKCDVN SKQFQDAMRY VWIPRLIERI QALPQSLAGQ  180
SSTESTGLTT ASESQYWIDS NFLPETSGST SSESSDQLQV CSIPDPTTTD QFMNNPSTNQ  240
YGSDNGSGCY QYGTNSDFPG FEHSNYWSSN GGDLSVENLW NEENIWFLQQ QLSDDQWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-263714224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227817.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227817.10.0PREDICTED: transcription factor MYB108
TrEMBLM5XUE40.0M5XUE4_PRUPE; Uncharacterized protein
STRINGXP_008227817.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.13e-80myb domain protein 78