PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227658.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 571aa    MW: 66830.5 Da    PI: 6.2451
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227658.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.59e-131297291
            FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                    +Y+eY+k++G  vrk++s+k  ++ge +  t  C +egk ++++++     +++++ +tgCka+++     dg+w+++ ++l+ nH+++p
  XP_008227658.1 12 YYREYGKQLGIPVRKRTSQKG-DEGELKYVTISCGQEGKYKSKSSN---VLKPHPSIKTGCKARVRAGILLDGRWQINFIKLDQNHDMSP 97
                    8***************99998.8888***************99888...899**********************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.4E-101297IPR004330FAR1 DNA binding domain
PfamPF105515.8E-36217310IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MTFNNIDEIV VYYREYGKQL GIPVRKRTSQ KGDEGELKYV TISCGQEGKY KSKSSNVLKP  60
HPSIKTGCKA RVRAGILLDG RWQINFIKLD QNHDMSPTKA RYFRCHRTIS SDVKRRIELN  120
DKAGVRLNKS YNPLVVEAGV HENISFLEKD CRNYIENVRR LRLGEGDATA IQTYFLNMQA  180
QNSNFFYAID LDQDGRLRNV FWVDARSRAI YEEFGDVVTF DTTYLTNKYD MSFAPFVGLN  240
HHRQSILLGC GLISSEDTDA FIWLFKSWLA CMHEHAPRGI ITDQDKAMKN AIEIIFPNTR  300
HRWCLWHIMN KFPSKLNRYK QYEAIMYALQ SIVYDSLEKV EFEEDWDEII EKYELQDNEW  360
LVGLYNERQH WFVEQYENAL KVKVQMEKQE DFKSSSIGFD CGTHYNMEKH AQEVYTISKY  420
KEFHDELIGK MYCDYVSHKV NGANFEYQIY EDFMMEGKKE RLYFKHNDVM RCKKAFDEIK  480
ELANDSDNKC MIVMTWMDNV KEELSKHNVF GGSDQPNPQS PIGRNIENDD LQLTEFDDTC  540
HIVGSSTSKG DGVVGTQESI TMQYEIRIGI S
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227658.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227658.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251PQZ50.0A0A251PQZ5_PRUPE; Uncharacterized protein
STRINGXP_008227658.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-80FAR1-related sequence 5