PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008227623.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | SRS | ||||||||
Protein Properties | Length: 366aa MW: 37127.3 Da PI: 8.2778 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 221.4 | 1.8e-68 | 147 | 307 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 + t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + aa a +++ +++++k++r l ++q+++s+t++s++++ XP_008227623.2 147 ASTMTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSGAAGGGAGSNSgSTSSAKKPR-LIGASQTTTSHTSTSNTTP 240 5789************************************************99999999998884445555555.5699999************ PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++ +tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e XP_008227623.2 241 PRSYDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGVE 307 ******999********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.5E-62 | 149 | 307 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 3.9E-27 | 151 | 193 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 8.0E-30 | 259 | 306 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MAGMPINAST NPATALCVGV GVGVIPLLTT TPCLAPPNIS NVDDDEDNNA HTPTGMSMGM 60 GMGMGMGMGM GMSMSMGMMS SGQHRNNRTA GGGGIQLWQQ PQPHFFKKTP HDLAATSLGG 120 THLVQGGGGG GVGNNVMNSG SAAASGASTM TCQDCGNQAK KDCTHRRCRT CCKSRGFDCA 180 THVKSTWVPA ARRRERQLMS GAAGGGAGSN SGSTSSAKKP RLIGASQTTT SHTSTSNTTP 240 PRSYDTSSSH QDAGFKESLP GQVRAPAVFK CVRVTAVEDG DDEYAYQAVV KIGGHVFKGF 300 LYDQGVEGRE GFPNISELHL GGGGGTSGGG NGGRNGASSP ILDTSDVYGA SSGGLLGGSN 360 FGNPIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008227623.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008227623.2 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 9e-86 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A314ZGG7 | 0.0 | A0A314ZGG7_PRUYE; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
STRING | XP_008227623.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6504 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 2e-75 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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