PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227608.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 369aa    MW: 41835.9 Da    PI: 3.8785
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227608.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.98.2e-1981443128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykv..ePwdLpk.....kvkaeekewyfFskrdkkyat.gk.rknratk..sgyW 83 
                     +GfrF+Ptd+el++ +L k v +kk    + +++i++++i+ +  eP+++ +     +++ +++e+yfFs+ ++ +++ g+ + nr++    g+W
  XP_008227608.1   8 VGFRFRPTDQELITLFLYKMVVEKKalmATYDTIIRKFNIFGTefEPSEIWNgfggeQLHPHDQELYFFSELNTLSSKaGSrKINRKVGlgGGTW 102
                     7*******************99999785444556*****9855339****75466666666999******998877653441557765555999* PP

             NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +      +v++++g+++g k+ + + +  + + e++ W+++ey+l
  XP_008227608.1 103 SGERC-DAVYDEEGNEIGHKRKFRYEN--EGSEEHSGWFLEEYSL 144
                     98766.678888************984..334469********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.7296161IPR003441NAC domain
PfamPF023658.1E-148144IPR003441NAC domain
SuperFamilySSF1019415.75E-198160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MADSDDRVGF RFRPTDQELI TLFLYKMVVE KKALMATYDT IIRKFNIFGT EFEPSEIWNG  60
FGGEQLHPHD QELYFFSELN TLSSKAGSRK INRKVGLGGG TWSGERCDAV YDEEGNEIGH  120
KRKFRYENEG SEEHSGWFLE EYSLSGEGCA FDYVICRLRK NESNYFPDDN TMMINDIITL  180
DDINTLDDTK MIFSEMEWPL PDLPQIADQN HVPLPASSVG ADSVDGVIEA CEPSNLVNDN  240
QMGNNNSDEH QDQLLNNTDY CPHDTLIFLG DSDEEGYLIN SPTIDDDMDE LFPDLAGEWP  300
LPQMPQIAAT DESQVPFPTS EVGAESTNGE EMEAYCNPSH FQNMGNYQPL EEDINCFSNY  360
SFVDELMGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227608.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLM5W1X60.0M5W1X6_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008227608.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3980622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.13e-09NAC domain containing protein 45