PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008227593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 33608 Da PI: 6.6309 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.7 | 8.2e-52 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL++k++g++l + +ike+d+yk++Pw+Lp+ + +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + XP_008227593.1 9 LPPGFRFHPTDEELVNYYLCRKCAGQPLAV-PIIKEIDLYKFDPWQLPELALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKHIGK- 101 79*************************999.88***************7656689*************************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvfy g+ap+g+kt+W+mheyrl XP_008227593.1 102 -PKALGIKKALVFYAGKAPRGVKTNWIMHEYRL 133 .778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-62 | 6 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.377 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-28 | 10 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGSGSELELP PGFRFHPTDE ELVNYYLCRK CAGQPLAVPI IKEIDLYKFD PWQLPELALY 60 GEKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKHIG KPKALGIKKA LVFYAGKAPR 120 GVKTNWIMHE YRLANVDRSA SKKNNNLRLD DWVLCRIYNK KGSIEKHNVA MERSKMTKYP 180 EILHEQKPEM TQMPPPHTDM SSMDSAPRVQ QTTDYSSCSE HVLSPEVTWE KEVQSELQWS 240 SDELENSLNT LDNQFINYMD GFSDILDPFG AAQPQYQMDQ QNMFAYLQTQ F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-83 | 5 | 166 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008227593.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008227593.1 | 0.0 | PREDICTED: NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-117 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | M5X1L4 | 0.0 | M5X1L4_PRUPE; Uncharacterized protein | ||||
STRING | XP_008227593.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-119 | NAC family protein |