PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_008227312.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 448aa MW: 50053.5 Da PI: 4.0142 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.1 | 5.2e-09 | 25 | 67 | 8 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 r++ +kR ++ KA LS LCd+ v +i ++ +g++ +++ XP_008227312.1 25 PRKTAMAKRGSTLKNKAGRLSKLCDIAVYMIALGADGEINDWP 67 599***************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.37E-8 | 24 | 83 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 8.746 | 26 | 70 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 448 aa Download sequence Send to blast |
MALPKSNPRV SVSMKMKRVS DAMKPRKTAM AKRGSTLKNK AGRLSKLCDI AVYMIALGAD 60 GEINDWPENQ QDLKSVLLKY KNLKRGFKDQ IEKGLFSVEK GFLEFVDDGE NRDLGIQDNC 120 LGAKLESLNE RIGAVTMKMM MMRDDGKRSF MDLYKNIMEP DAADQQQQSS LNLNLNLHPT 180 DLVIPTPKPN LIGEINLNLD PGDLVIPTPK PNLIGQINLN LDPGNVVIPT PKPNLIGQFQ 240 QDYLSSIHEP TVDANDYLSL VLGNDDHNDV GLMEDYLQLY DLELPEEPQE QLQPQPPSVP 300 SVEISDDDMK LLLSDCEIGL MEDDMQFCDN LDDYEPTVDT IYDFLSWVLG DEDQIDNGVM 360 EDDLHPQSTN HNGVSSTEGL KIDGPDVVNV GPSMSITDDD IWLLLTDCAI GLMQEDDDND 420 LSDFLAPLET MLLQVPQHQP HSELNLNF |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_008227312.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008227304.1 | 0.0 | PREDICTED: uncharacterized protein LOC103326831 isoform X1 | ||||
Refseq | XP_008227312.1 | 0.0 | PREDICTED: uncharacterized protein LOC103326831 isoform X2 | ||||
Refseq | XP_016649699.1 | 0.0 | PREDICTED: uncharacterized protein LOC103326831 isoform X3 | ||||
TrEMBL | A0A251NP84 | 0.0 | A0A251NP84_PRUPE; Uncharacterized protein | ||||
STRING | XP_008227312.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18650.1 | 3e-09 | AGAMOUS-like 103 |