PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226955.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 399aa    MW: 43650.6 Da    PI: 10.0378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226955.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-184390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l ++v+++G g+W+++ r  g++R++k+c++rw ++l
   XP_008226955.1 43 KGPWTAVEDQILMEYVRKHGEGNWNAVQRNSGLNRCGKSCRLRWANHL 90
                     79******************************************9986 PP
2Myb_DNA-binding49.21.2e-1596139146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E+ l++++++++G++ W++ a+ ++ gRt++++k++w++
   XP_008226955.1  96 KGAFSPDEERLILELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 139
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-243893IPR009057Homeodomain-like
PROSITE profilePS5129417.7413890IPR017930Myb domain
SuperFamilySSF466894.12E-3140137IPR009057Homeodomain-like
SMARTSM007172.5E-154292IPR001005SANT/Myb domain
PfamPF002494.4E-164390IPR001005SANT/Myb domain
CDDcd001679.03E-124590No hitNo description
PROSITE profilePS5129425.42491145IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-2594144IPR009057Homeodomain-like
SMARTSM007171.8E-1695143IPR001005SANT/Myb domain
PfamPF002495.2E-1596139IPR001005SANT/Myb domain
CDDcd001672.94E-1298139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MTPSSSNNNS GLLQQSEGRS PQELSCGGGG GGDVVEGSKG LKKGPWTAVE DQILMEYVRK  60
HGEGNWNAVQ RNSGLNRCGK SCRLRWANHL RPNLKKGAFS PDEERLILEL HAKYGNKWAR  120
MASQLPGRTD NEIKNYWNTR VKRRQRQGLP LYPNDIKQSQ QSHSHSRSLP TTTIQNPFQS  180
TTNCTTPTFS FQIQSPIQAH HLHSLSPTPP SLSPLSSPHH PKSTTLTSLP LFDPSNPTTT  240
SSFSSFTFHR PAPILGAPVR YKRYRDSVGF SPPVSPTPQR STSILRANSM PDIASSHLTS  300
TNSMPESAAF QFPRTLNPSL PPLPSSRTQF EYSESFLSST GSVYSVKSEL PSSQVSQTQS  360
EVTIDTKVIS AAAAAALSAS QAHSSNGLLE DLLQEAEFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31371441107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226955.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226955.10.0PREDICTED: transcription factor MYB51-like
TrEMBLA0A251PP310.0A0A251PP31_PRUPE; Uncharacterized protein
TrEMBLA0A251PP340.0A0A251PP34_PRUPE; Uncharacterized protein
STRINGXP_008226955.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-72myb domain protein 101