PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226600.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 296aa    MW: 34093.2 Da    PI: 10.1695
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226600.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-19221031199
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + s+rl++p kf+++++g+  + ++  l+ +s + W+vkl  + + ++ ++++GW++Fvk++ L+ gD +vF+++g+s+f  +vk++++
  XP_008226600.1  22 F-SQRLRIPPKFIKNFNGQ--SLRKCALRGPSRQWWDVKL--EERENSLFFRDGWQGFVKDHVLEFGDLLVFSYNGKSKF--KVKIYDR 103
                     4.467********999888..4568***************..********************************998999..9999987 PP
2B341.13.3e-131992771598
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     r+++p++ a + g+  +    ++l+d++grsW v+l+   +++r  ++ GW e  kan++  gD+++F+l++  ++ + +++fr
  XP_008226600.1 199 RVTIPNELAVAEGLRRRD--AVMLQDPTGRSWLVELR-VEYRNRLDMAIGWTECRKANQISPGDSIIFELVK--QGVMQFHIFR 277
                     789******999988544..7***************6.56667889999********************975..6667888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.9E-238106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-238106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3811104IPR003340B3 DNA binding domain
CDDcd100171.77E-1912102No hitNo description
SMARTSM010192.0E-1314104IPR003340B3 DNA binding domain
PfamPF023621.3E-1614103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-17180277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-16180277IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.6E-7187279IPR003340B3 DNA binding domain
CDDcd100176.62E-9197277No hitNo description
PROSITE profilePS5086311.928199279IPR003340B3 DNA binding domain
PfamPF023621.3E-10199277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MARPRKRSPE KPSFFKILIG DFSQRLRIPP KFIKNFNGQS LRKCALRGPS RQWWDVKLEE  60
RENSLFFRDG WQGFVKDHVL EFGDLLVFSY NGKSKFKVKI YDRSACEKNV EVAERRSGSP  120
VSLVNKGNQA QVKDEIVELD TEDCENKTID SNRRSCKYPI SEKRPISFCV QETSTGSILF  180
KSENPCFLVC SRKQHLLYRV TIPNELAVAE GLRRRDAVML QDPTGRSWLV ELRVEYRNRL  240
DMAIGWTECR KANQISPGDS IIFELVKQGV MQFHIFRVAV GGNRLSVITA APNVKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226600.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A314Z0G50.0A0A314Z0G5_PRUYE; Putative B3 domain-containing protein
STRINGXP_008226600.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-23B3 family protein