PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226279.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 503aa    MW: 56112.6 Da    PI: 4.5165
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226279.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.9e-36211122102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++ ++sws+ +nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_008226279.1  21 FLNKTYDMVDDPSTNAVVSWSDGNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKT 106
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     + r+k 
  XP_008226279.1 107 VSRRKP 112
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.9E-3915105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.5E-6217110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3417110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEGVEDAATM INLANTPPPP FLNKTYDMVD DPSTNAVVSW SDGNNSFVVW NVPEFSRDLL  60
PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ KHLLKTVSRR KPAHAQSHQQ  120
APPQVQSSQV GACVEVGNLG LEEEVERLKN DKNSLMQELV RLRQKQQATD NQLHNVGQRV  180
QGMEQRQQQM MSFLAKAMHS PGFLSQLVQH QNENNRRITG SNKKRRLPRQ EDEILVGKLS  240
TKSLDGQMVK YQPSMNEAAK AMLRQILKMN TSPRLEPSIN PDAFLIDNVP SSDALESGDT  300
SNRILGVTFS EVPPTSVECY MPEEESGFPD SCHSTTISEI QYSPYAVTNC VKAAQVLEEN  360
MHNFQEDAVM PESTQMQGGV PESTVEIPNA NFMSSETGNA EYMDMSAVLD GTLPTETDAF  420
SPEPDVDALL GSNLPGITDI FWEQFLPASP LTGDVDEINL SSTDGGTTDQ ELKLAEENGW  480
DKTQHMNHIT EQMELLAPGS RIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-251911018120Heat shock factor protein 1
5d5u_B8e-251911027129Heat shock factor protein 1
5d5v_B8e-251911027129Heat shock factor protein 1
5d5v_D8e-251911027129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226279.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8532531e-121AB853253.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH235.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226279.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotQ84T611e-163HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLM5WUM70.0M5WUM7_PRUPE; Uncharacterized protein
STRINGXP_008226279.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-128heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]