PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008225874.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 890aa MW: 102273 Da PI: 8.3744 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.6 | 1.2e-24 | 95 | 203 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...................tekerrtraetrtgCkaklkvkkekdgkw 76 +fY+eYAk+vGF ++++s++s+ +g++++++f C+++g+++e++++ +++ r +r+ ++t+Cka+++vk++ dg+w XP_008225874.1 95 SFYREYAKSVGFAAVIKASRRSRVSGKFIDAKFACTRYGSKRESSTAeapesvsnsressicssvkRKRGRASRSWEKTDCKACMHVKRQ-DGRW 188 5*****************************************999999***************998888899*****************9.**** PP FAR1 77 evtkleleHnHelap 91 + ++ +eHnHe++p XP_008225874.1 189 IIRSFIKEHNHEIFP 203 ************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-22 | 95 | 203 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-30 | 322 | 414 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.198 | 602 | 638 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.4E-5 | 611 | 636 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.7E-4 | 613 | 640 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 890 aa Download sequence Send to blast |
MGIDLEQPSG EYHKEDNRRS VNNIVDGRGE ENHRAIVSVT NGPVKDKENA GQNVNGRVSD 60 TRNKTVTRDE INLNSSRDSE PRDGMEFESK EEAFSFYREY AKSVGFAAVI KASRRSRVSG 120 KFIDAKFACT RYGSKRESST AEAPESVSNS RESSICSSVK RKRGRASRSW EKTDCKACMH 180 VKRQDGRWII RSFIKEHNHE IFPDQAYYFR GHRNFDLGTG DADGLHAIRR RTKKMYVNMA 240 RQSGGYKKLD NQKGGGTNQS LSGKHLSLEE GDAQVMLDHF LYMQDENPNF FYAIDLNEEQ 300 RLRNVFWVDA KGKLDYGNFC DVVFLDTTYI KNEYKLPFVP FIGVNHHFQF ILLGCALLAN 360 ESKSTYVWLM RAWLKAMGGH APKVILSDQN KVLKEAIAEV LPDSRHCLCL WHILGKIPEK 420 LGYVIRQHDK FMVKFNKCIF KSWTNEQFEK RWWKMVERFN LRDDVWFQSL YEDREQWIPT 480 YMRDIFLAGM STTQRSESIN SFFDKYMQRK TTLKEFLEQY KTILREKYEE EVKADFETWH 540 KQPALRSPSP FGKQMATMYT HAIFKKFQVE VLGVVACHPK KETEDGAIKT FRVQDFEEDQ 600 DFVVAWNEMT SDISCFCHSF EFNGFLCRHV MIVLQMSGVH NIPSQYILKR WTKDAKNRQT 660 LREGSASVDC RVKRYNDICE RAFKLSDEGS LSQESYNIAF NALEEALRSC ESINNSIQSV 720 IEPISGETHG SEGVNQGNSK NKTNKKNGAS KKGQVQSEPE VITIGVQESW QQVEQLVSRA 780 PTLDGYFGSQ QIVQGTGQPS TIASSRDHYY SNQHMQGLGQ LNSIAPIHDA HYITQQRLHG 840 VGQLHFRPQS IPSCFDIPDG LQDTDQSTVG PTQLHGLASR HLHSKDLSRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008225874.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225874.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_008225875.1 | 0.0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | M5WQ40 | 0.0 | M5WQ40_PRUPE; Uncharacterized protein | ||||
STRING | XP_008225874.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |