PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225759.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 287aa    MW: 32313.6 Da    PI: 4.5909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225759.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09170214655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r RR+ri ++ +eL +l+P a     +K++ ae+L+ A +Y+k Lq
  XP_008225759.1 170 SIAARERRRRITEKTQELGRLIPGA-----TKMNTAEMLQAAYKYVKFLQ 214
                     677899******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.703164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11168222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11168222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-7170214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.24E-5180218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAMMSSFCPA DDWGSLQFLN PDMNMVSFQA QQEQLAAASG ILGLQDYSLP NFPDYTTCID  60
PLFETYESSS SENFLLPDFY LPTENINLSS FQSPEIFPSL DEYGCSYQQN PKRQKFGMCS  120
FFNAYDDQFL QPQLFAPTPS PQTQIQQQPS YECAKMNKPN GGAVTLSAQS IAARERRRRI  180
TEKTQELGRL IPGATKMNTA EMLQAAYKYV KFLQAQVSVL KLMSDSPVHQ EKKDLQAVAS  240
PVVQEKLYSE EKCLVSKEFV QVLANDHDIE SKPLLKDCVA RLLQTNG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225759.10.0PREDICTED: transcription factor bHLH52
TrEMBLA0A314YTN90.0A0A314YTN9_PRUYE; Transcription factor bHLH52
STRINGXP_008225759.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-22bHLH family protein