PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225411.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 494aa    MW: 54543.7 Da    PI: 8.7442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225411.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056486123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_008225411.1 64 FVCEICNKGFQRDQNLQLHRRGH 86
                    89*******************88 PP
2zf-C2H2120.00066141163123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +++
  XP_008225411.1 141 WKCEKCSKKYAVQSDWKAHSKVC 163
                     58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.02E-76386No hitNo description
Gene3DG3DSA:3.30.160.601.6E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121717.8E-56486IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496486IPR007087Zinc finger, C2H2
SMARTSM003550.0176486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355100106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4129161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-7136161No hitNo description
SMARTSM00355140141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MMSEDGLSIP STVKGLAQEL SSSPNPNPNT DNQLKRKRNL PGTPDPDAEV IALSPKSLMA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV IRKKVYVCPE RTCVHHEPSR  120
ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KVCGTREYRC DCGTLFSRKD  180
SFITHRAFCD ALAAEESARF GSASTNNMNP SFINGCNNIT NINPHHQPPR IPHFIPMFQQ  240
EFSGSDPAAA NNSHLNSNAF MPELVPTPSM DMFGSSSSSQ TQWLINNNKF PEEASFNLSM  300
SSSSLARGLK EELEESKGSL SETISASATS FYNNNNHQHQ PMSATALLQK AAQMGSTRSN  360
NNNNNPATTF NDTAFGFMST SSNSNQLSSY GHHHNKNEVE SFNDLVNSMS SSTPATTIRD  420
GSLFSSSFLS NKHLMNMPGA ANLIKQSQSE QSSLTRDFLG VGSDAISGVP FFQQELAKLA  480
SMGDLSQYTS SGHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36137207372Zinc finger protein JACKDAW
5b3h_F2e-36137207372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190103KLKQRSNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225411.10.0PREDICTED: protein indeterminate-domain 9
SwissprotQ944L31e-118IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLA0A251NMS50.0A0A251NMS5_PRUPE; Uncharacterized protein
STRINGXP_008225411.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-102C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]