PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008225157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 35771.2 Da PI: 8.4839 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.1 | 5.1e-34 | 57 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+e++ ++L++kv +++ ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ XP_008225157.1 57 LPAGVKFDPTDQEIL-QHLEAKVLSDTrklhplID--EfipTLEGEnGICYTHPEKLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHteedgs 147 799***********9.99****9999956644322..22222333336**********.666777788******************744446555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l XP_008225157.1 148 ETRWHKTGKTRPVLV-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 197 778************.9*************66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-38 | 51 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.91 | 57 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-15 | 58 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MTWCNDSDDE RAIQIITPPP PPPPSHNNNE FRNITCPSCG HHIEFQDQAG IHDLPGLPAG 60 VKFDPTDQEI LQHLEAKVLS DTRKLHPLID EFIPTLEGEN GICYTHPEKL PGVNKDGQIR 120 HFFHRPSKAY TTGTRKRRKV HTEEDGSETR WHKTGKTRPV LVGGAVKGFK KILVLYTNYG 180 RQRKPEKTNW VMHQYHLGNN EEEKDGELVV SKVFYQTQPR QCGSSIKDVP MFDHHKGVNI 240 RSGHGHDPLP IAKKAGLVEY YNPGGGFINY DHHNLHNQGG HNRESPPQLI PNLVVQGDGS 300 SFIRLTADAS KGKLERK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008225157.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF198119 | 0.0 | KF198119.1 Malus hupehensis NAC domain protein (NAC43) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225157.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Refseq | XP_016648600.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-124 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A314XGK9 | 0.0 | A0A314XGK9_PRUYE; NAC domain-containing protein 73-like | ||||
STRING | XP_008225157.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-125 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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