PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008225084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HSF | ||||||||
Protein Properties | Length: 194aa MW: 22121.3 Da PI: 9.4262 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 105.6 | 4e-33 | 19 | 116 | 2 | 102 |
HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y++le ++ k+++sw+++g+ f+v+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkk++ ++ weFkh++F+kg XP_008225084.1 19 FLSKTYDLLEkgaaeeGDSGKKIVSWNAEGSGFIVWSPAEFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSPKQ---------WEFKHEKFQKGC 104 9*********66655545899*************************************************9988.........************ PP XXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkks 102 +++l +i rkk XP_008225084.1 105 RHMLVEITRKKC 116 *********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.9E-35 | 10 | 109 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.36E-26 | 15 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.6E-42 | 15 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.0E-29 | 19 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-11 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-11 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-11 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAATTSSGQS PRTRSPAPFL SKTYDLLEKG AAEEGDSGKK IVSWNAEGSG FIVWSPAEFS 60 ELLLPKYFKH NNFSSFIRQL NTYGFKKTSP KQWEFKHEKF QKGCRHMLVE ITRKKCEPSA 120 FPVYLKASEE SGSSSTTVAA AEENNRLLLM EENKNLRKQK LELQMQLSQF KALEMKLLDC 180 LAQNMEDHQN KVRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 7e-16 | 17 | 114 | 2 | 104 | Putative transcription factor |
5d5x_B | 7e-16 | 17 | 114 | 2 | 104 | Putative transcription factor |
5d5x_E | 7e-16 | 17 | 114 | 2 | 104 | Putative transcription factor |
5d8k_B | 9e-16 | 16 | 114 | 3 | 105 | Heat shock factor protein 2 |
5d8l_B | 9e-16 | 16 | 114 | 3 | 105 | Heat shock factor protein 2 |
5d8l_D | 9e-16 | 16 | 114 | 3 | 105 | Heat shock factor protein 2 |
5d8l_F | 9e-16 | 16 | 114 | 3 | 105 | Heat shock factor protein 2 |
5d8l_H | 9e-16 | 16 | 114 | 3 | 105 | Heat shock factor protein 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008225084.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008225084.1 | 1e-143 | PREDICTED: heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A314ZQ47 | 1e-137 | A0A314ZQ47_PRUYE; Heat stress transcription factor B-2a | ||||
STRING | XP_008225084.1 | 1e-143 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11357 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 5e-39 | heat shock factor 4 |