PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224974.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 479aa    MW: 52487 Da    PI: 6.5738
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224974.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17154203155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_008224974.1 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 203
                     78*******************......55************************997 PP
2AP240.19.3e-13246296155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_008224974.1 246 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 296
                     79********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-9154203IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-15154212IPR016177DNA-binding domain
PROSITE profilePS5103217.385155211IPR001471AP2/ERF domain
SMARTSM003808.1E-31155217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-16155211IPR001471AP2/ERF domain
PfamPF008472.0E-8246296IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-16246305IPR016177DNA-binding domain
CDDcd000183.02E-25246306No hitNo description
SMARTSM003805.1E-32247310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15247304IPR001471AP2/ERF domain
PROSITE profilePS5103215.554247304IPR001471AP2/ERF domain
PRINTSPR003675.1E-6248259IPR001471AP2/ERF domain
PRINTSPR003675.1E-6286306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MLDLNLNVVG SDPNDVESCG TQMDESGTSN SSVVNADASS TNDDSCSTRA ARYDAVTTFN  60
FDILKVRGGE DEEDDVVVTK ELFPVTGALS NWPGQGQSSA SSSLVRKNLM ELGFDHGGSG  120
EVRLVQQKQQ QPAAPPPQQQ QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  180
LGGFDTAHAA ARAYDRAAIK FRGVDADINY NLSDYEEDLK QMKNLTKEEF VHILRRQSTG  240
FSRGSSRYRG VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA AIKCNGREAV  300
TNFEPSTYEG EMISEAGNED GDHNLDLNLG ISPPSFGNCQ KEVEGHLQFH SGPNDGHNGK  360
RMEHNVNATM SDPPFKGLVM TSQHPPLWNG VYPSYFSNQE RATEKRIALG SQGPPNWAWQ  420
MHGQVSATPM PLFSTAASSG FSFSATAPSA AVHPLQPSTP TALNLCFTSP ATAAANTSQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224974.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844370.0KP784437.1 Rosa chinensis putative RAP2-1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224974.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ8H4431e-116AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A251NP600.0A0A251NP60_PRUPE; Uncharacterized protein
STRINGXP_008224974.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-117related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]