PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008224939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 884aa MW: 97184.4 Da PI: 7.4422 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.7 | 1e-18 | 333 | 432 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++ XP_008224939.1 333 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PEGK 425 89**************************555566778***************9989999999***9.********************766.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_008224939.1 426 LVMGFRK 432 7777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.41E-20 | 330 | 432 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-31 | 330 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-22 | 331 | 432 | No hit | No description |
Pfam | PF02362 | 4.4E-16 | 333 | 432 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.378 | 333 | 434 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-21 | 333 | 434 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.191 | 561 | 611 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.4E-12 | 566 | 608 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 884 aa Download sequence Send to blast |
MSSSSSKVCY NSECKELKSE HPRKGWRLRT GEYAELCDRC YLAYEEGRFC ETFHMNAAGW 60 RCCESCGKRV HCGCIVSSHA FTLLDPGGVE CMTCARKNFV LTPNPAWPTS MFFHSPLSER 120 LKDLSVKNWT HLAGSGPVPW RQAPSLFNSS IPSSELHTRV PYEVDVSTGI NKLNASERIF 180 VSSMEKKKVE DFSERLMKVN LTISTQESLE NGKPGNNREE QSSSCLNISQ QSASLKEDPS 240 TPQFGPYGSV SETNAQVGVT GSNLRPTLPL AKQFNGNLQN GVESSGDTQI RNARPRADAR 300 GRNQLLPRYW PRFTDQELQQ ISGDKNSVIT PLFEKMLSAS DAGRIGRLVL PKKCAEAYFP 360 PISQPEGLPL KVQDSKGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDIVTFSRL 420 EPEGKLVMGF RKASTAPPSD QENETNKASN GVSALADAEL ADPSSWSKVD KSGYIAKEAL 480 GSKSLISRKR KNSTLGSKSK RLKIENEDLI ELKLTWEEAQ GLLRAPANHI PTVVVIEGFE 540 IEEYEDAPIL GMPTIYATGS AGEKIQWAQC EDCFKWRKLP MNALLPSKWT CSDNSWDPER 600 SSCSAAQDLT AEQLEDLLPS HSTVTSKKMK AAKQDPDNIE ALEGLDTLAN LAILGEGESL 660 PASAQATTKH PRHRPGCSCI VCIQPPSGKG PKHKQTCTCN VCLTVKRRFR TLMMRREKKQ 720 SEKEAESTRK KQQQQQLVVI DKLDDDTPIC CNAGSSSPNQ KKEVLELSDD DLNRTKSSTP 780 PFKGQIDLNI QPEREEELSP GSDSGSMMKL LQDATERYLK QQRLSSSGGS ENSSGNRSQQ 840 VGGEAGGGEP LSNGVTLGSS NHDGGNDCPA TLSIKASASM TATG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 2e-65 | 311 | 436 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 2e-65 | 311 | 436 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 2e-65 | 311 | 436 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 2e-65 | 311 | 436 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 2e-65 | 311 | 436 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 2e-65 | 311 | 436 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 2e-65 | 311 | 436 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 488 | 502 | KRKNSTLGSKSKRLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008224939.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224939.1 | 0.0 | PREDICTED: B3 domain-containing protein Os07g0563300 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A251PF88 | 0.0 | A0A251PF88_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224939.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7738 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-163 | HSI2-like 1 |