PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008224896.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 431aa MW: 46164 Da PI: 6.7867

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008224896.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.9	1.2e-05	323	360	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_008224896.1 323 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 360 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.973	311	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.18E-6	321	365	No hit	No description
SuperFamily	SSF47459	7.72E-12	321	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-9	325	368	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MAEEFQAGIC GSSWWNTSRH ALVASPCSVG FNDHMGSFGC PNDMVDIKAS RSSCGFDHSS 60 SSSSTPSDLN QALLLSRSGG GRAESNFHNS MLQEGVGVDE DSSSLIDGFK PMSQDFSLDQ 120 LGSSSSSGFP ITSSSSAANS YGFPSTFLQS IFDSEVSQPQ PQQSLFNNNH FSNDLLLPPS 180 PTSSCWPPRY SPSSCLRPSA VSLPKQLQPG GGGGGGLHFP NNINTPFWNT PAATALNHGN 240 GIRSSNGLFS SSQSQLTAPA SSALVHEHKP NSHNFTTKGN TNEDVQDSNS VVKKSGSSMS 300 SCEPVFKRAR IETPSPLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIEYIKFL 360 HEQVSVLSTP YMKNGAPMQH QQGSDHKMKE AEGAKHDLKS RGLCLVPISS TFPVANETTD 420 FWTPTFGATF R

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MAEEFQAGIC GSSWWNTSRH ALVASPCSVG FNDHMGSFGC PNDMVDIKAS RSSCGFDHSS  60
SSSSTPSDLN QALLLSRSGG GRAESNFHNS MLQEGVGVDE DSSSLIDGFK PMSQDFSLDQ  120
LGSSSSSGFP ITSSSSAANS YGFPSTFLQS IFDSEVSQPQ PQQSLFNNNH FSNDLLLPPS  180
PTSSCWPPRY SPSSCLRPSA VSLPKQLQPG GGGGGGLHFP NNINTPFWNT PAATALNHGN  240
GIRSSNGLFS SSQSQLTAPA SSALVHEHKP NSHNFTTKGN TNEDVQDSNS VVKKSGSSMS  300
SCEPVFKRAR IETPSPLPTF KVRKEKLGDR ITALQQLVSP FGKTDTASVL HEAIEYIKFL  360
HEQVSVLSTP YMKNGAPMQH QQGSDHKMKE AEGAKHDLKS RGLCLVPISS TFPVANETTD  420
FWTPTFGATF R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008224896.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008224896.1	0.0	PREDICTED: transcription factor bHLH112 isoform X3
TrEMBL	A0A251PF02	0.0	A0A251PF02_PRUPE; Uncharacterized protein
STRING	XP_008224893.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	4e-54	bHLH family protein