PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008224874.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26134.6 Da PI: 6.9382 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 82 | 128 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l + + +K +Ka+iL Av+ +++L XP_008224874.1 82 KACREKMRRDRLNDRFLELSSMLEPG---RPPKTDKAAILGDAVRVVNQL 128 678**********************8...89***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.148 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.30E-10 | 81 | 133 | No hit | No description |
Pfam | PF00010 | 2.2E-9 | 81 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-11 | 83 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-13 | 83 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-13 | 84 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd14686 | 0.00528 | 143 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGSPPQNHNW VFDYGVLEDI PVPGGDLPPL DLPGFTWPSH SFVAPAAPSV DFDDSFGNSD 60 SIKESGCRKR VRSGSCNVTG SKACREKMRR DRLNDRFLEL SSMLEPGRPP KTDKAAILGD 120 AVRVVNQLRG EAQQLKDSNG DLQEKINELK AEKNELRDEK QRLKTEKENI ERQIKALNTQ 180 PGFLPHPAAI PGPFSAPGQV VGGKLMPFVG YPGVSMWQFM PPAAVDTSQD HVLRPPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008224874.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689425 | 0.0 | KP689425.1 Prunus pseudocerasus isolate Unigene14417 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224874.1 | 1e-176 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 4e-92 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | M5WIN3 | 1e-172 | M5WIN3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224874.1 | 1e-175 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1602 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-92 | bHLH family protein |