PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_008224697.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 214aa MW: 23209.3 Da PI: 5.5967

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008224697.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.4	5.2e-43	49	148	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_008224697.1 49 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLA 143 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_008224697.1 144 KAQAE 148 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.238	48	149	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-43	49	146	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MECSNETMNT NYTTTSSTPL SQSPSSSPSS PPPPLPPTPT PNPPVVISPC AACKILRRRC 60 ADKCVLAPYF PPTEPAKFTI AHRVFGASNI IKFLQDLPES QRADAVSSMV YEASARIRDP 120 VYGCAGAICH LQKQVNELQA QLAKAQAELV NMQCQQANLV ALICMEMTQS NEQGSPQQSL 180 DHNFIASSHG SNQSNLSFLD DTTTLGSLWE PLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	41	156	3	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	41	156	3	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008224697.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008224697.1	1e-158	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9SK08	2e-78	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A251NML0	1e-122	A0A251NML0_PRUPE; Uncharacterized protein
STRING	XP_008224697.1	1e-157	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-70	LOB domain-containing protein 11