PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 303aa MW: 33529.6 Da PI: 6.3537

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008224666.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108	5e-34	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_008224666.1 18 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	7.35E-18	17	72	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-32	17	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-25	18	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-23	101	147	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDPINGGNSL NNPNLASKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL RVMGVQGLTI 60 YHVKSHLQKY RLAKYLPDSS SDADKKEPGD VLSNLDGSSG MQITEALKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG VRSEAPGSGH LARLSDDNCP ESDNKTDPAT 180 PAPTSECPLQ DKAAKECTPA KSLSIDESFS SHHEPLTPDS ACQVDSPAES PKAERSMKKR 240 RVIMGEAFAD PEVVLTHQIL ESSLNSSYQQ AHTTFLPREQ FDPSSGISFR NENILEKVAG 300 SDM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-24	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-24	18	75	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008224666.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR828557	0.0	FR828557.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb6 gene), cultivar Yellow Island.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008224666.1	0.0	PREDICTED: myb family transcription factor APL isoform X2
Refseq	XP_008224667.1	0.0	PREDICTED: myb family transcription factor APL isoform X2
Refseq	XP_008224668.1	0.0	PREDICTED: myb family transcription factor APL isoform X2
Swissprot	Q9SJW0	1e-132	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A314YHJ5	0.0	A0A314YHJ5_PRUYE; Protein PHR1-LIKE 1 isoform X1
STRING	XP_008224661.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-118	G2-like family protein