PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224395.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 233aa    MW: 25723.2 Da    PI: 9.0468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224395.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-055072123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  XP_008224395.1 50 YTCSFCKREFRSAQALGGHMNVH 72
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-64776No hitNo description
PROSITE profilePS5015711.245077IPR007087Zinc finger, C2H2
SMARTSM003550.00385072IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-75074IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEKNRLSNNL KDHGIVTRAI RDSNNKRIIH CSQSCEEDYI NGFSWPPRSY TCSFCKREFR  60
SAQALGGHMN VHRKDRARLK NSPPIDGQYT STIFNLNLKP NPNPNFLSTS SPSSSSSLVS  120
PFSSSLSLPS LISPPLPPPP PPIFSVPSSE NMKWVVGGTL FNHPLNLKAS DLSTKLKGAK  180
SLCGVGQEDQ DGCIKTLKKA ADPHQILRLD LEIGMFGDTN KEDLDLELRL GYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-144572229superman protein
2l1o_A2e-144572229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224395.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224395.11e-171PREDICTED: transcriptional regulator SUPERMAN
TrEMBLM5XPB21e-131M5XPB2_PRUPE; Uncharacterized protein
STRINGXP_008224395.11e-171(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.19e-25C2H2 family protein