PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224269.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 794aa    MW: 87503.4 Da    PI: 6.383
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224269.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.31e-15497535240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  XP_008224269.1 497 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCHECFNKP 535
                     689**********************************96 PP
2TCR50.54.1e-16582620139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  XP_008224269.1 582 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 620
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.8E-17496537IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.173497622IPR005172CRC domain
PfamPF036382.1E-11499534IPR005172CRC domain
SMARTSM011144.4E-17582623IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11584620IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MDTPERNQIG TPKAKFEDSP VFNYINSLSS IKPVKSVHIT QTFSSLSFAS LPSVFTSPHV  60
IAHKESRFLR RHYTSDQSKP ESSLESGNKV SANEDAAQLY INSEKLREDC VPEVSTGEDS  120
VEPSSEHSKF VIELPRNLKY DXGSPDCRPT TRCGTEAHCE LEVADLSAPL VPYVQKTYEE  180
GSSNDEAHLQ VICQTVQRKE GTGCDWESLI SDAADLLIFY SPNGTEAFKG LMQNSLDPAT  240
RFCTSLAPQL TQNDVNDEQN MQVLDMVGSG GQLETEYPSS QYGEASQLER TEQMEDHLNN  300
CMVSSQSEKE DNKVETPMQF SXKPAVLNLQ RGLRRRCLDF EMAGARRKSL DNVSNSSSNM  360
LSQSDEKITT NDKQLVPMKP GGESSRCILP GIGLHLNAFA KTSKDYKIIK CESLAYGRQL  420
SLPNSTADIH SPTGGQGPGH ESLSSASSES DMDGTENGVQ LAHDASQEPA FLANEEFNQK  480
SPKKKRRRFD HAVETESCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCHE CFNKPIHEDT  540
VLATRKQIES RNPLAFAPKV IRSSDSVPEL GEESSKTPAS ARHKRGCNCK KSSCLKKYCE  600
CYQGGVGCSI SCRCEGCKNA FGRKDGSFIG TEAELYEEEA EACEKSVAEK HQQKIEIQKN  660
EEQRLDSALP TTPLRLSRQM VSLPFSSKNK PPQSSVFSIG GSSSGLYTSQ KLGKPNILRP  720
ESKFERHSQT VPEDEMPEIL QGDGSPSTGV KTASPNSKRV CPPNSDFGPS PGRRTGRKLI  780
LQSIPLFPSL TPQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1749961912120Protein lin-54 homolog
5fd3_B5e-1749961912120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482487KKKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224269.10.0PREDICTED: LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 2
TrEMBLA0A251QRB30.0A0A251QRB3_PRUPE; Uncharacterized protein
STRINGXP_008224269.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-134Tesmin/TSO1-like CXC domain-containing protein