PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224266.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 795aa    MW: 87332.5 Da    PI: 6.0965
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224266.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.87e-16497535240
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     ++k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  XP_008224266.1 497 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 535
                     689**********************************96 PP
2TCR50.54.1e-16583621139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  XP_008224266.1 583 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 621
                     589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.5E-17496537IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.28497623IPR005172CRC domain
PfamPF036381.6E-11499534IPR005172CRC domain
SMARTSM011144.4E-17583624IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.3E-11585621IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MDTPERNQIG TPKAKFEDSP VFNYINSLSP IKPVKSVHIT QTFSSLSFAS LPSVFTSPHV  60
SAHKESRFLR RHSTSDPSKP ESSLESGNKV SANEDAAQLY INSEELREDC VPGVSTGEDS  120
VEPSSEHSKF VIELPRNLKY DCGSPDCRPT TRCGTEAHCE LEVADLSAPL VPYVQKTSEE  180
GSSNDEAHLQ IICQTLQRKE GTGCDWESLI SDAADLLIFD SPNGTEAFKG LMQNSLDPAT  240
RFCTSLAPQL TQNDVNDEQN MQVLDIVGSG RQLETEDPSS QYGEASQLER TEQMEDHLNN  300
CMVSSQSEKE DNKVETPMQF NCKPAVLNLQ RGLRRRCLDF EMAGARRKSL DNVSNSSSNM  360
LSQSDEKITT NDKQLVPMKP GGESSRCILP GIGLHLNALA KTSKDYKIIK CESLAYGRQL  420
SLPNSTADIH SPTGGQGPGH ESFSSASSER DMDGTENGVQ LAHDASQEPA FLANEEFNQN  480
SPKKKRRRFE QAGETESCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCQE CFNKPIHEDT  540
VLATRKQIES RNPLAFAPKV IRSSDSVPEL GQEESSKTPA SARHKRGCNC KKSSCLKKYC  600
ECYQGGVGCS ISCRCEGCKN AFGRKDGSFI GTEAELDEEE AEACEKSVAE KHQQKIEIQK  660
NEEQRLDSAL PTTPLRLSRQ MVSLPFSSKN KPPRSSVFSI GGSSSGLYTS QKLGKPNILR  720
PESKFERHSQ TVPEDEMPEI LQGDGSPSTG VKTASPNSKR VCPPNSDFGP SPGRRTGRKL  780
ILQSIPSFPS LTPQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1749962012120Protein lin-54 homolog
5fd3_B5e-1749962012120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482487KKKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224266.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A251QRE60.0A0A251QRE6_PRUPE; Uncharacterized protein
STRINGXP_008224266.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-143TESMIN/TSO1-like CXC 2