PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008223870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27470.3 Da PI: 5.2915 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.9e-13 | 54 | 96 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++Pk + K++Ka+i + A++YI++L XP_008223870.1 54 VSERNRRKKLNERLFALRAVVPKiS------KMDKASIIKDAIDYIQEL 96 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-17 | 47 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.279 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.96E-13 | 50 | 101 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 53 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-14 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-11 | 54 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDNIGDEYKH YWETNMFLQT EELDSWGLDE AFSGYYDSSS PDGGASSMAS KNIVSERNRR 60 KKLNERLFAL RAVVPKISKM DKASIIKDAI DYIQELHEQE RRIQTEIGEL ESGRSKKNLG 120 SEFDQELPVL LRSKKKKIEQ LYDSGGSRTS TIEVLELRVT YMGEKTVVAS LTCSKRTDTM 180 VKLCEVFESL KLKIITANIT AFSGRVLKTV FIEADEEEKD HLKIKIETAI AALNDPQSPM 240 SI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008223870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008223870.1 | 1e-179 | PREDICTED: transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 9e-99 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A251QTX5 | 1e-177 | A0A251QTX5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008223870.1 | 1e-178 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 2e-88 | bHLH family protein |