PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008223039.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 751aa MW: 87218 Da PI: 7.9783

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008223039.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.9	9.1e-20	34	108	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+v+ + ++HnH l XP_008223039.1 34 DFYSLYATRMGFRVRTGQLYRSRTDGSVSSRRFVCSKEGFQIS--------------SRTGCPALIRVQRRDSGKWVVDLFLKDHNHGL 108 6*************************************765..............699*************************98 PP
2	FAR1	67	5e-21	188	263	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA+++GF++r+ + +sk +g+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++l+++HnHel XP_008223039.1 188 QFYHVYAENTGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQDSGRWVVDRLDKNHNHELE 263 6*************************************999..............4899*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-15	34	108	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-16	188	263	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-27	362	455	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.977	639	673	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-6	648	675	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	9.6E-7	650	670	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence Send to blast
MLPLKTVNAE DEGESRVLEP YVGLEFDSAD VARDFYSLYA TRMGFRVRTG QLYRSRTDGS 60 VSSRRFVCSK EGFQISSRTG CPALIRVQRR DSGKWVVDLF LKDHNHGLGS TEENHSPILQ 120 KKTLTRKNSI VELSHRPKIK SIEEIEDGRP CPSGIISAKR FKWDGDEMQP EVEPSAGLEF 180 NSANEAYQFY HVYAENTGFR IRIGQLFRSK LDGSITSRRF VCSKEGFQHP SRVGCGAFMR 240 IKRQDSGRWV VDRLDKNHNH ELESQLEVQK TNLFSSKKFI EEEIGGLENE DIVDINNGNN 300 VKRRRENHIG SDWYRVLFDY FQTKQAEDTG FFYAVEVDNG SCMSIFWADG RSRFSCCQFG 360 DVIILDTSYR KGIYLVPFAT FIGINHHKQP VLLGCALIAD ESEKSFTWLF QTWLRAMSGR 420 CPLSIIADQD DVIQHAIMQV FPGTHHRFSL WQFKAKESEH LRLMNTSFKY EYEKCIYECQ 480 TADEFDSAWN ALLSRYGLKD NGWLKAMYAK RKSWVPLYLR ATFFAGIPFN ESIESFFGTR 540 FNAQTQLKEF VSQYERGLER RREEERKEDF NSFNLQAFLQ TKEPLEEQCR RLYTLNIFRI 600 FQKELLQSYS YLGFKIYEEG ATIRYLVRKC GNDNEKCVVT VGPSNPKVIC SCRMFEFEGV 660 LCRHVLRVFQ ILDLKEVPPC YILQRWTKNA EYGIPCDSES GGNPQELKAL MVWSLREAAC 720 QYIEAGATSL EKHRLAYEIM REGGRKLCWQ R

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence Send to blast

MLPLKTVNAE DEGESRVLEP YVGLEFDSAD VARDFYSLYA TRMGFRVRTG QLYRSRTDGS  60
VSSRRFVCSK EGFQISSRTG CPALIRVQRR DSGKWVVDLF LKDHNHGLGS TEENHSPILQ  120
KKTLTRKNSI VELSHRPKIK SIEEIEDGRP CPSGIISAKR FKWDGDEMQP EVEPSAGLEF  180
NSANEAYQFY HVYAENTGFR IRIGQLFRSK LDGSITSRRF VCSKEGFQHP SRVGCGAFMR  240
IKRQDSGRWV VDRLDKNHNH ELESQLEVQK TNLFSSKKFI EEEIGGLENE DIVDINNGNN  300
VKRRRENHIG SDWYRVLFDY FQTKQAEDTG FFYAVEVDNG SCMSIFWADG RSRFSCCQFG  360
DVIILDTSYR KGIYLVPFAT FIGINHHKQP VLLGCALIAD ESEKSFTWLF QTWLRAMSGR  420
CPLSIIADQD DVIQHAIMQV FPGTHHRFSL WQFKAKESEH LRLMNTSFKY EYEKCIYECQ  480
TADEFDSAWN ALLSRYGLKD NGWLKAMYAK RKSWVPLYLR ATFFAGIPFN ESIESFFGTR  540
FNAQTQLKEF VSQYERGLER RREEERKEDF NSFNLQAFLQ TKEPLEEQCR RLYTLNIFRI  600
FQKELLQSYS YLGFKIYEEG ATIRYLVRKC GNDNEKCVVT VGPSNPKVIC SCRMFEFEGV  660
LCRHVLRVFQ ILDLKEVPPC YILQRWTKNA EYGIPCDSES GGNPQELKAL MVWSLREAAC  720
QYIEAGATSL EKHRLAYEIM REGGRKLCWQ R

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008223039.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008223038.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A251QXS7	0.0	A0A251QXS7_PRUPE; Uncharacterized protein
STRING	XP_008223038.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]