PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008223038.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 786aa MW: 91050.3 Da PI: 7.7884

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008223038.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.8	9.6e-20	69	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY+ YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+v+ + ++HnH l XP_008223038.1 69 DFYSLYATRMGFRVRTGQLYRSRTDGSVSSRRFVCSKEGFQIS--------------SRTGCPALIRVQRRDSGKWVVDLFLKDHNHGL 143 6*************************************765..............699*************************98 PP
2	FAR1	66.9	5.3e-21	223	298	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA+++GF++r+ + +sk +g+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++l+++HnHel XP_008223038.1 223 QFYHVYAENTGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQDSGRWVVDRLDKNHNHELE 298 6*************************************999..............4899*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-15	69	143	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.4E-16	223	298	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.0E-27	397	490	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.977	674	708	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-6	683	710	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.0E-6	685	705	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MGMESSSTHF TIMRSSDTDS KIEDSGNNLV LKAYPMLPLK TVNAEDEGES RVLEPYVGLE 60 FDSADVARDF YSLYATRMGF RVRTGQLYRS RTDGSVSSRR FVCSKEGFQI SSRTGCPALI 120 RVQRRDSGKW VVDLFLKDHN HGLGSTEENH SPILQKKTLT RKNSIVELSH RPKIKSIEEI 180 EDGRPCPSGI ISAKRFKWDG DEMQPEVEPS AGLEFNSANE AYQFYHVYAE NTGFRIRIGQ 240 LFRSKLDGSI TSRRFVCSKE GFQHPSRVGC GAFMRIKRQD SGRWVVDRLD KNHNHELESQ 300 LEVQKTNLFS SKKFIEEEIG GLENEDIVDI NNGNNVKRRR ENHIGSDWYR VLFDYFQTKQ 360 AEDTGFFYAV EVDNGSCMSI FWADGRSRFS CCQFGDVIIL DTSYRKGIYL VPFATFIGIN 420 HHKQPVLLGC ALIADESEKS FTWLFQTWLR AMSGRCPLSI IADQDDVIQH AIMQVFPGTH 480 HRFSLWQFKA KESEHLRLMN TSFKYEYEKC IYECQTADEF DSAWNALLSR YGLKDNGWLK 540 AMYAKRKSWV PLYLRATFFA GIPFNESIES FFGTRFNAQT QLKEFVSQYE RGLERRREEE 600 RKEDFNSFNL QAFLQTKEPL EEQCRRLYTL NIFRIFQKEL LQSYSYLGFK IYEEGATIRY 660 LVRKCGNDNE KCVVTVGPSN PKVICSCRMF EFEGVLCRHV LRVFQILDLK EVPPCYILQR 720 WTKNAEYGIP CDSESGGNPQ ELKALMVWSL REAACQYIEA GATSLEKHRL AYEIMREGGR 780 KLCWQR

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MGMESSSTHF TIMRSSDTDS KIEDSGNNLV LKAYPMLPLK TVNAEDEGES RVLEPYVGLE  60
FDSADVARDF YSLYATRMGF RVRTGQLYRS RTDGSVSSRR FVCSKEGFQI SSRTGCPALI  120
RVQRRDSGKW VVDLFLKDHN HGLGSTEENH SPILQKKTLT RKNSIVELSH RPKIKSIEEI  180
EDGRPCPSGI ISAKRFKWDG DEMQPEVEPS AGLEFNSANE AYQFYHVYAE NTGFRIRIGQ  240
LFRSKLDGSI TSRRFVCSKE GFQHPSRVGC GAFMRIKRQD SGRWVVDRLD KNHNHELESQ  300
LEVQKTNLFS SKKFIEEEIG GLENEDIVDI NNGNNVKRRR ENHIGSDWYR VLFDYFQTKQ  360
AEDTGFFYAV EVDNGSCMSI FWADGRSRFS CCQFGDVIIL DTSYRKGIYL VPFATFIGIN  420
HHKQPVLLGC ALIADESEKS FTWLFQTWLR AMSGRCPLSI IADQDDVIQH AIMQVFPGTH  480
HRFSLWQFKA KESEHLRLMN TSFKYEYEKC IYECQTADEF DSAWNALLSR YGLKDNGWLK  540
AMYAKRKSWV PLYLRATFFA GIPFNESIES FFGTRFNAQT QLKEFVSQYE RGLERRREEE  600
RKEDFNSFNL QAFLQTKEPL EEQCRRLYTL NIFRIFQKEL LQSYSYLGFK IYEEGATIRY  660
LVRKCGNDNE KCVVTVGPSN PKVICSCRMF EFEGVLCRHV LRVFQILDLK EVPPCYILQR  720
WTKNAEYGIP CDSESGGNPQ ELKALMVWSL REAACQYIEA GATSLEKHRL AYEIMREGGR  780
KLCWQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008223038.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008223038.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A251QXS7	0.0	A0A251QXS7_PRUPE; Uncharacterized protein
STRING	XP_008223038.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]