PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222500.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 166aa    MW: 18291.8 Da    PI: 8.3273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222500.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH154.5e-0556951054
                    HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    + R +++ +++  L++l+ +      +K + a++L +A++YI+ L
  XP_008222500.1 56 KERKEKLGERIVALQQLVSPY-----GKTDTASVLLEAMDYIRFL 95
                    6778889999999***99999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.1E-1045113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.634695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1252108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.45E-656100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MIVSSLCNAG ARFSGEEGID VRNMTEHKRS PCSVDQSSFT SLASKRHKTD LSISTKERKE  60
KLGERIVALQ QLVSPYGKTD TASVLLEAMD YIRFLHEQVK VLSAPYLEST PTAKMQELEP  120
YSLRSRGLCL VPVSCTAGVA QSNGADIWAP IKNTSPKFEN AISQFH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222500.11e-122PREDICTED: transcription factor bHLH113 isoform X1
RefseqXP_021834401.11e-122transcription factor bHLH153 isoform X1
SwissprotQ7XJU25e-63BH153_ARATH; Transcription factor bHLH153
TrEMBLM5XFT61e-119M5XFT6_PRUPE; Uncharacterized protein
STRINGXP_008222500.11e-121(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-65bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]