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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008222476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 245aa MW: 28434.9 Da PI: 6.8794 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.2 | 4.9e-27 | 72 | 163 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s +++ i+ r+fvCskeg+r+e+ + +++r +r+ tr gC+a+l+++ ++ gkw+++ +++eHnHel+p XP_008222476.1 72 DFYEMYGRHMGFTIRNNRTRRSLKDNAIIGREFVCSKEGFRAEKYAT-SQNRVlpSRPATRKGCNAMLRITAKDGGKWVIYGFVKEHNHELNP 163 6*********************9********************9988.33333459**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.4E-24 | 72 | 163 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MMASTSGQGF SPGRNYRCWL DETFSSHETA DDELSYTPDV DNNLIETSSQ DFSLTLEPVI 60 GMEFESAEDA RDFYEMYGRH MGFTIRNNRT RRSLKDNAII GREFVCSKEG FRAEKYATSQ 120 NRVLPSRPAT RKGCNAMLRI TAKDGGKWVI YGFVKEHNHE LNPNKIPPRR SHRIAFCEDE 180 KDLKIRELSM ELHREKKKSA AYQEKLQIVL KYIEEHTQRL SLKVELATNN MRELESEKQD 240 SSYSD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008222476.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008222476.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_016647407.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | M5XZA2 | 0.0 | M5XZA2_PRUPE; Uncharacterized protein | ||||
STRING | XP_008222476.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15811 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-47 | FAR1 family protein |