PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 707aa MW: 80697.9 Da PI: 6.6917

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222405.2	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	386.1	4e-118	335	705	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++cA+av+s d++ a++lL+++++++sp+gd+ +Rla+yf+ +L+arla++ + ly+ l + +t+ +e l+a++l++ +P+ k+ h+ XP_008222405.2 335 TLLTQCAQAVASYDQRTASELLKQIRKHSSPYGDAAERLAHYFADGLEARLAGTRTPLYSPLLSIQTP---AAEILKAYQLYVTHCPYKKMLHFF 426 69**********************************************************999998...8******************* PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 N++I++ +e+++r+HiiDf+is+G+QWp+++q L++Rp+gpp++R+T+++ p++g +e++eetg+rL k+A++++vpf+++v +a+++e+++ XP_008222405.2 427 SNRTIMKLAEKATRLHIIDFGISYGFQWPCFIQRLSKRPGGPPNIRMTAIELPQPGfrPTERVEETGRRLDKYAKRFNVPFQYKV-IAQKWETIQ 520 ***************************************************9************************9.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +e+L+++++E ++Vn++++l++++de+v +s+rd+vLkl+k+++P++ ++ + +ns+ Fl+rf eal ++sa fd++ea++pre+e+r + XP_008222405.2 521 FEDLKIDRDELIVVNCMHRLKHIPDETVMASSPRDTVLKLIKRINPDLYIHGVINGAYNSPFFLTRFREALFHFSAQFDMFEATIPREDEQRLMF 615 ******************************************************************************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 E++++g++i+nv+aceg er+er et+++W+ r ++aGFk++pl+++ k++k++l+ ++ + +r++e+ +++++gWk+r ++ + +W+ XP_008222405.2 616 EKAVFGKDIMNVIACEGLERVERPETYKQWQVRYQRAGFKQLPLDQELLKKVKTMLKVMGyHNDFRIDEDGHWMLQGWKGRIIMGLAFWK 705 ******************************************************999999***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.413	307	684	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-115	335	705	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MDTLLERLSV SKEKFHFGHG SIPVHSNQNL VNGFQVNHEP TNPPFLPTNS DHPSDSSTSL 60 SSGSDGDTFD ISDCSQPVLK YISDILLEED LEGKPCMLQD CLALQAAEKS FYDVLNQKDP 120 PSPNQPPLSD HQSFENSDDD STHSCHRSND YRAEQTDWVL DSSETSHVQS SLVESPPDNL 180 LASDSLYGNF GGVGEARKLL PNENFGIIDL EKYQFMSQGP NTPFRNLASK RENDGYNSTN 240 RSKEKKNHQR EDGDYAEEGR SNKQSAASAD DSEPQEMFDK VLLCSVNHES ECCSHDEPLK 300 NEGSGKLKPN KQSKGSKTAR SKKQNNKREV VDFSTLLTQC AQAVASYDQR TASELLKQIR 360 KHSSPYGDAA ERLAHYFADG LEARLAGTRT PLYSPLLSIQ TPAAEILKAY QLYVTHCPYK 420 KMLHFFSNRT IMKLAEKATR LHIIDFGISY GFQWPCFIQR LSKRPGGPPN IRMTAIELPQ 480 PGFRPTERVE ETGRRLDKYA KRFNVPFQYK VIAQKWETIQ FEDLKIDRDE LIVVNCMHRL 540 KHIPDETVMA SSPRDTVLKL IKRINPDLYI HGVINGAYNS PFFLTRFREA LFHFSAQFDM 600 FEATIPREDE QRLMFEKAVF GKDIMNVIAC EGLERVERPE TYKQWQVRYQ RAGFKQLPLD 660 QELLKKVKTM LKVMGYHNDF RIDEDGHWML QGWKGRIIMG LAFWKPA

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MDTLLERLSV SKEKFHFGHG SIPVHSNQNL VNGFQVNHEP TNPPFLPTNS DHPSDSSTSL  60
SSGSDGDTFD ISDCSQPVLK YISDILLEED LEGKPCMLQD CLALQAAEKS FYDVLNQKDP  120
PSPNQPPLSD HQSFENSDDD STHSCHRSND YRAEQTDWVL DSSETSHVQS SLVESPPDNL  180
LASDSLYGNF GGVGEARKLL PNENFGIIDL EKYQFMSQGP NTPFRNLASK RENDGYNSTN  240
RSKEKKNHQR EDGDYAEEGR SNKQSAASAD DSEPQEMFDK VLLCSVNHES ECCSHDEPLK  300
NEGSGKLKPN KQSKGSKTAR SKKQNNKREV VDFSTLLTQC AQAVASYDQR TASELLKQIR  360
KHSSPYGDAA ERLAHYFADG LEARLAGTRT PLYSPLLSIQ TPAAEILKAY QLYVTHCPYK  420
KMLHFFSNRT IMKLAEKATR LHIIDFGISY GFQWPCFIQR LSKRPGGPPN IRMTAIELPQ  480
PGFRPTERVE ETGRRLDKYA KRFNVPFQYK VIAQKWETIQ FEDLKIDRDE LIVVNCMHRL  540
KHIPDETVMA SSPRDTVLKL IKRINPDLYI HGVINGAYNS PFFLTRFREA LFHFSAQFDM  600
FEATIPREDE QRLMFEKAVF GKDIMNVIAC EGLERVERPE TYKQWQVRYQ RAGFKQLPLD  660
QELLKKVKTM LKVMGYHNDF RIDEDGHWML QGWKGRIIMG LAFWKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-51	315	706	1	380	Protein SCARECROW
5b3h_A	4e-51	322	706	7	379	Protein SCARECROW
5b3h_D	4e-51	322	706	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222405.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222405.2	0.0	PREDICTED: scarecrow-like protein 30
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A251NLM5	0.0	A0A251NLM5_PRUPE; Uncharacterized protein
STRING	XP_008222405.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]