PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222186.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CAMTA
Protein Properties Length: 994aa    MW: 111221 Da    PI: 5.6995
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222186.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.85.8e-55131273116
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwlk+ e++ iL+n+ek++l+ e++++p+sgsl+L+n++++r+fr+DG++w+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr
  XP_008222186.1  13 QEaQTRWLKPAEVLYILQNHEKFKLAPEPPQQPSSGSLFLFNKRVLRFFRRDGHHWRKKKDGRTVGEAHERLKVGNAETLNCYYAHGEDNPNFQR 107
                     5669******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhyle 116
                     r+yw+L+ ++e+ivlvhy+e
  XP_008222186.1 108 RSYWMLDPAYEHIVLVHYRE 127
                     ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.7418134IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7611129IPR005559CG-1 DNA-binding domain
PfamPF038593.8E-4814127IPR005559CG-1 DNA-binding domain
CDDcd001020.00385434518No hitNo description
PfamPF018331.3E-7434517IPR002909IPT domain
Gene3DG3DSA:2.60.40.103.4E-7434517IPR013783Immunoglobulin-like fold
SuperFamilySSF812969.38E-19434518IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.205.0E-16621721IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-17628722IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.865628720IPR020683Ankyrin repeat-containing domain
CDDcd002041.40E-15633720No hitNo description
PfamPF127962.7E-8637721IPR020683Ankyrin repeat-containing domain
SMARTSM002487.5E-4661690IPR002110Ankyrin repeat
PROSITE profilePS5008811.461661693IPR002110Ankyrin repeat
SMARTSM002482300700729IPR002110Ankyrin repeat
SMARTSM00015120778800IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.346779808IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.41E-7823885IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000152833855IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.041834863IPR000048IQ motif, EF-hand binding site
PfamPF006120.0041836854IPR000048IQ motif, EF-hand binding site
SMARTSM000151.8E-4856878IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.993857881IPR000048IQ motif, EF-hand binding site
PfamPF006123.0E-5859878IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MMQSGYNIND LFQEAQTRWL KPAEVLYILQ NHEKFKLAPE PPQQPSSGSL FLFNKRVLRF  60
FRRDGHHWRK KKDGRTVGEA HERLKVGNAE TLNCYYAHGE DNPNFQRRSY WMLDPAYEHI  120
VLVHYREISE GKSSTGTFAQ SPVSSSSFSN SPSDKTTQNR GSISMISDLH EPYQNLSSPG  180
SVEVNSDVAI KKNGRENPDK LYGTGESDSS AKFDVSQALR RLEEQLSLNE DSFNEFVDDN  240
PNSDIMDRFN EFLDDTNGSD ILEDHSDMTN QDQFTAFHGP EYVVHDQFYG GRAQMQGNAT  300
NSGEHSQFIG QEFADRNKES APWKEVLDSC KPSSVVEPKE KCLYELDTNE KLPSSFRSGP  360
TEGQEHCQWL NSDGTNVKNF SLSLPEEVDS FKLSPCSSAM GTHSDYYTSL FEQGQTGTLD  420
SDISLTVAQK QKFTIREISP EWGYATEATK VIIVGSFLCD PSESAWSCMF GDIEVPAQII  480
QDGVLHCEAP PHLFGKVTIC ITSGNRVSCS EVREFEYRVK SSSGTNNSPP TETTKSAEEL  540
LLLVRFVQML MSDSSMRNRD SVEPETLRRL KADDDTWDSI IEALLLGNGS ASSNIYWLLE  600
ELLKDKLQQW LSSRSHGLDQ TGCSLSKKEQ GIIHMVAGLG FEWALNSILS FGVNINFRDI  660
NGWTALHWAA RFGREKMVAV LIASGASAGA VTDPNSQDPI GKTPASIAAI SGHKGLAGYL  720
SEVSLTSHLS SLTLEESELS KGSAEVEAEI TVNSISNRSL HGNEDQASLK NTLAAVRNSA  780
QAAARIQSAF RAHSFRKRRQ KEAGVSIDDY GISSDDIQGL SAMSKLAFRN PRDYNSAAIS  840
IQKKYRGWKG RKDFLALRQK VVKIQAHVRG YQVRKHYKVI CWAVGILDKV VLRWRRKGVG  900
LRGFRHETQS SEESEDEDIL KVFRKQKVDG AIEEAVSRVL SMVESPEARQ QYHRMLERYH  960
QAKAELGGTS GEADVPNSLD DTFNVEDIDM YQFP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222186.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222186.10.0PREDICTED: calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A251R1J90.0A0A251R1J9_PRUPE; Uncharacterized protein
STRINGXP_008222185.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]