PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_008221515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 26375.8 Da PI: 5.0501 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.9 | 5e-33 | 39 | 169 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdkevl 93 +G+rF+P+++++vv+yL +k+ g++l+++++ike+ +y+++P +Lp+ k+ + +e ++F+ +++ y++ gk ++r+tksgyW g+++ev+ XP_008221515.1 39 VGYRFDPSEDQIVVFYLFNKILGRELPINDIIKEISVYDHDPDELPNgdfKHGLDCNEAFYFAYTEQVYSSrGKITRRTTKSGYWDLDGEEEEVK 133 7*********************************************5444444467799********99963777888****************9 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ +vg k++vf+kg+ap+g +td +mheyr+ XP_008221515.1 134 YRnGDITVGFEKVMVFHKGTAPNGIETDFIMHEYRV 169 9856677***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.332 | 37 | 198 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.32E-34 | 37 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-16 | 39 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MALPSPQSTS QVPETEKDFD LLKCSKIENG KKEAEIHLVG YRFDPSEDQI VVFYLFNKIL 60 GRELPINDII KEISVYDHDP DELPNGDFKH GLDCNEAFYF AYTEQVYSSR GKITRRTTKS 120 GYWDLDGEEE EVKYRNGDIT VGFEKVMVFH KGTAPNGIET DFIMHEYRVN PLIVPTHVLN 180 DSIRAKIERY VVCRIIHEGV SNFPRTNFHQ DGLLGLLKKQ NQIDMTEIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-23 | 33 | 198 | 10 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_008221515.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008221511.1 | 1e-172 | PREDICTED: NAC transcription factor 29-like isoform X1 | ||||
Refseq | XP_008221512.1 | 1e-172 | PREDICTED: NAC transcription factor 29-like isoform X1 | ||||
Refseq | XP_008221513.1 | 1e-172 | PREDICTED: NAC transcription factor 29-like isoform X1 | ||||
Refseq | XP_016647392.1 | 1e-172 | PREDICTED: NAC transcription factor 29-like isoform X1 | ||||
TrEMBL | A0A251R794 | 1e-165 | A0A251R794_PRUPE; Uncharacterized protein | ||||
STRING | XP_008221511.1 | 1e-171 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-28 | NAC-like, activated by AP3/PI |