PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008221449.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 485aa MW: 53191.1 Da PI: 6.0978

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008221449.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+Cg+sF++ ++ +H t+ XP_008221449.1 125 YECPICGQSFRSEDEVSVHVDTC 147 99*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	1.1E-9	19	61	No hit	No description
PROSITE profile	PS50157	8.974	125	154	IPR007087	Zinc finger, C2H2
CDD	cd09212	5.16E-20	179	274	No hit	No description
SuperFamily	SSF143503	4.84E-18	189	265	IPR018997	PUB domain
SMART	SM00580	2.1E-19	192	259	IPR018997	PUB domain
Pfam	PF09409	4.7E-16	193	266	IPR018997	PUB domain
SuperFamily	SSF54236	2.51E-12	339	452	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	1.1E-9	356	450	No hit	No description
PROSITE profile	PS50033	11.105	368	452	IPR001012	UBX domain
Pfam	PF00789	1.2E-5	369	419	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MGDKFKEFIK NPFSSSSSGK FKGQGRVLGS SSSGPANSAL LRQSQAPQSK PKPNPVSNSN 60 SNSSSSAASP NPKPSPQKTQ NLDQNKSEFS NNSKPNRKPE NGFDPFDSLI TPGKRSQNGY 120 TLNVYECPIC GQSFRSEDEV SVHVDTCVNT SVDNKSAEGP GVSGSEDIGV GSSRSELEAR 180 IGTFASGNPA TGSVEVVLRL LRNIVKEPEN VKFRKIRMSN PKIREAIGEV VGGIELLEFV 240 GFELKEEEGD MWAMMEVPSE EQISLMKNGI ALLEPPKVQE LQKIENSPSI DTPKVDEQIE 300 PKKVDRQTKV FFSVSESVAA RIELPESFYN LSAMELKREA ETRKKKIEDS QMLIPRSYKE 360 KQAKAAKNRY RKTVVRIQFP DGVVLQGVFS PWESTSSLYE YVSSALKEPS LEFELLNPVA 420 IKRRVIPHFP RAGEKAATLA DEDLVPSALV KFKPIETDSV VFTGLCNELL EISEPLTSGS 480 AVAPV

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MGDKFKEFIK NPFSSSSSGK FKGQGRVLGS SSSGPANSAL LRQSQAPQSK PKPNPVSNSN  60
SNSSSSAASP NPKPSPQKTQ NLDQNKSEFS NNSKPNRKPE NGFDPFDSLI TPGKRSQNGY  120
TLNVYECPIC GQSFRSEDEV SVHVDTCVNT SVDNKSAEGP GVSGSEDIGV GSSRSELEAR  180
IGTFASGNPA TGSVEVVLRL LRNIVKEPEN VKFRKIRMSN PKIREAIGEV VGGIELLEFV  240
GFELKEEEGD MWAMMEVPSE EQISLMKNGI ALLEPPKVQE LQKIENSPSI DTPKVDEQIE  300
PKKVDRQTKV FFSVSESVAA RIELPESFYN LSAMELKREA ETRKKKIEDS QMLIPRSYKE  360
KQAKAAKNRY RKTVVRIQFP DGVVLQGVFS PWESTSSLYE YVSSALKEPS LEFELLNPVA  420
IKRRVIPHFP RAGEKAATLA DEDLVPSALV KFKPIETDSV VFTGLCNELL EISEPLTSGS  480
AVAPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifs_A	4e-12	323	452	23	146	Tether containing UBX domain for GLUT4
5ifs_C	4e-12	323	452	23	146	Tether containing UBX domain for GLUT4
5ifw_A	1e-12	323	452	23	146	Tether containing UBX domain for GLUT4
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Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008221449.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008221449.1	0.0	PREDICTED: plant UBX domain-containing protein 2
Swissprot	Q9ZU93	1e-174	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	M5XEF8	0.0	M5XEF8_PRUPE; Uncharacterized protein
STRING	XP_008221449.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]