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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_008221449.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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| Family |
C2H2 |
| Protein Properties |
Length: 485aa MW: 53191.1 Da PI: 6.0978 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_008221449.1 | genome | BGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.4 | 1.2e-05 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+Cp+Cg+sF++ ++ +H t+
XP_008221449.1 125 YECPICGQSFRSEDEVSVHVDTC 147
99*****************9887 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 485 aa
Download sequence Send
to blast |
MGDKFKEFIK NPFSSSSSGK FKGQGRVLGS SSSGPANSAL LRQSQAPQSK PKPNPVSNSN 60
SNSSSSAASP NPKPSPQKTQ NLDQNKSEFS NNSKPNRKPE NGFDPFDSLI TPGKRSQNGY 120
TLNVYECPIC GQSFRSEDEV SVHVDTCVNT SVDNKSAEGP GVSGSEDIGV GSSRSELEAR 180
IGTFASGNPA TGSVEVVLRL LRNIVKEPEN VKFRKIRMSN PKIREAIGEV VGGIELLEFV 240
GFELKEEEGD MWAMMEVPSE EQISLMKNGI ALLEPPKVQE LQKIENSPSI DTPKVDEQIE 300
PKKVDRQTKV FFSVSESVAA RIELPESFYN LSAMELKREA ETRKKKIEDS QMLIPRSYKE 360
KQAKAAKNRY RKTVVRIQFP DGVVLQGVFS PWESTSSLYE YVSSALKEPS LEFELLNPVA 420
IKRRVIPHFP RAGEKAATLA DEDLVPSALV KFKPIETDSV VFTGLCNELL EISEPLTSGS 480
AVAPV
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5ifs_A | 4e-12 | 323 | 452 | 23 | 146 | Tether containing UBX domain for GLUT4 |
| 5ifs_C | 4e-12 | 323 | 452 | 23 | 146 | Tether containing UBX domain for GLUT4 |
| 5ifw_A | 1e-12 | 323 | 452 | 23 | 146 | Tether containing UBX domain for GLUT4 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269|PubMed:19176722, ECO:0000269|PubMed:23301616, ECO:0000269|Ref.8}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269|PubMed:19176722}. |
| Publications
? help Back to Top |
- Suzuki T,Park H,Till EA,Lennarz WJ
The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway.
Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7
[PMID:11587532] - Rancour DM,Park S,Knight SD,Bednarek SY
Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48.
J. Biol. Chem., 2004. 279(52): p. 54264-74
[PMID:15498773] - Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC
Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction.
Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45
[PMID:23301616]
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